c2pfam

AT3G08820.1 :

Domain Description Evalue Bits GA Start End
PPR_1 PPR repeat 9.5E-05 12 23.80 73 86
PPR_3 Pentatricopeptide repeat domain 0.018 5 25.00 74 93
PPR_2 PPR repeat family 1.9E-08 25 30.00 74 121
PPR PPR repeat 4.5E-06 17 25.00 78 107
PPR_long Pentacotripeptide-repeat region of PRORP 0.0052 6 27.00 96 227
PPR_3 Pentatricopeptide repeat domain 0.021 5 25.00 138 172
PPR_2 PPR repeat family 2.7E-06 18 30.00 145 177
TPR_19 Tetratricopeptide repeat 0.09 4 25.00 146 175
TPR_12 Tetratricopeptide repeat 0.23 2 30.10 146 171
PPR PPR repeat 5.2E-05 14 25.00 149 175
Coatomer_E Coatomer epsilon subunit 0.017 5 20.40 150 178
TPR_14 Tetratricopeptide repeat 0.67 1 23.50 151 182
TPR_10 Tetratricopeptide repeat 0.27 2 27.50 155 171
PPR_1 PPR repeat 0.0038 7 23.80 159 171
PPR_1 PPR repeat 1.9E-05 15 23.80 176 204
PPR_3 Pentatricopeptide repeat domain 5E-05 14 25.00 176 210
PPR_2 PPR repeat family 2.8E-13 40 30.00 176 213
PPR PPR repeat 7.6E-11 32 25.00 178 208
Vps39_1 Vacuolar sorting protein 39 domain 1 0.0026 8 21.40 179 210
TPR_14 Tetratricopeptide repeat 0.00095 10 23.50 179 207
DYW_deaminase DYW family of nucleic acid deaminases 0.59 0 31.60 183 215
TPR_7 Tetratricopeptide repeat 0.017 6 27.90 187 206
TPR_10 Tetratricopeptide repeat 0.04 4 27.50 187 206
TPR_12 Tetratricopeptide repeat 0.039 5 30.10 187 205
TPR_8 Tetratricopeptide repeat 0.32 2 25.70 187 205
TPR_19 Tetratricopeptide repeat 0.21 2 25.00 190 205
PPR_long Pentacotripeptide-repeat region of PRORP 1.7E-05 14 27.00 194 278
PPR_3 Pentatricopeptide repeat domain 8.5E-06 16 25.00 199 241
PPR PPR repeat 0.02 6 25.00 218 241
PPR_3 Pentatricopeptide repeat domain 0.0016 9 25.00 234 278
RNPP_C RNPP family C-terminal domain 0.0062 6 26.50 236 276
TPR_19 Tetratricopeptide repeat 0.019 6 25.00 237 276
TPR_17 Tetratricopeptide repeat 0.7 1 24.40 245 267
PPR_2 PPR repeat family 2.3E-06 18 30.00 246 277
PPR PPR repeat 5.3E-09 26 25.00 251 278
PPR_1 PPR repeat 1.9E-05 15 23.80 251 274
Coatomer_E Coatomer epsilon subunit 0.33 0 20.40 251 310
Vps39_1 Vacuolar sorting protein 39 domain 1 0.64 1 21.40 252 307
TPR_14 Tetratricopeptide repeat 0.48 2 23.50 252 276
TPR_7 Tetratricopeptide repeat 0.081 3 27.90 253 271
TPR_8 Tetratricopeptide repeat 0.05 4 25.70 253 270
PPR_1 PPR repeat 7.5E-05 13 23.80 275 304
PPR_3 Pentatricopeptide repeat domain 0.24 2 25.00 275 311
PPR_2 PPR repeat family 1.4E-09 28 30.00 276 324
PPR PPR repeat 2.2E-09 27 25.00 279 308
RNPP_C RNPP family C-terminal domain 0.73 -1 26.50 283 309
PPR_3 Pentatricopeptide repeat domain 3.6E-05 14 25.00 340 379
Vps39_1 Vacuolar sorting protein 39 domain 1 0.47 1 21.40 342 377
RNPP_C RNPP family C-terminal domain 0.046 3 26.50 343 375
Coatomer_E Coatomer epsilon subunit 0.043 3 20.40 343 377
PPR_2 PPR repeat family 3.1E-07 21 30.00 348 378
PPR PPR repeat 5.4E-08 23 25.00 351 379
PPR_1 PPR repeat 0.00011 12 23.80 352 375
PPR_long Pentacotripeptide-repeat region of PRORP 0.00018 11 27.00 354 422
PPR_2 PPR repeat family 6.5E-10 29 30.00 377 425
PPR_3 Pentatricopeptide repeat domain 0.0043 7 25.00 378 421
PPR PPR repeat 0.00034 11 25.00 380 410
PPR_1 PPR repeat 0.017 5 23.80 383 402
PPR_1 PPR repeat 0.64 0 23.80 409 438
PPR PPR repeat 0.032 5 25.00 416 438
PPR_1 PPR repeat 1.4E-05 15 23.80 447 476
PPR_2 PPR repeat family 0.0032 8 30.00 451 480
PPR PPR repeat 7.8E-05 13 25.00 452 477
PPR_3 Pentatricopeptide repeat domain 0.0017 9 25.00 479 507
PPR_long Pentacotripeptide-repeat region of PRORP 1 -1 27.00 479 547
PPR PPR repeat 0.075 4 25.00 484 509
TPR_14 Tetratricopeptide repeat 0.04 5 23.50 485 522
TPR_19 Tetratricopeptide repeat 0.0018 9 25.00 497 538
TPR_17 Tetratricopeptide repeat 0.0015 9 24.40 506 535
TPR_7 Tetratricopeptide repeat 0.091 3 27.90 519 539
TPR_10 Tetratricopeptide repeat 0.14 2 27.50 520 537
PPR PPR repeat 0.00066 10 25.00 524 546
PPR_2 PPR repeat family 0.14 3 30.00 529 547
PPR_1 PPR repeat 0.12 2 23.80 530 542
DYW_deaminase DYW family of nucleic acid deaminases 0 139 31.60 551 674
PPR PPR repeat 0.86 0 25.00 645 661

685

PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR_2
TPR_19
TPR_12
PPR
Coatomer_E
TPR_14
TPR_10
PPR_1
PPR_1
PPR_3
PPR_2
PPR
Vps39_1
TPR_14
DYW_deaminase
TPR_7
TPR_10
TPR_12
TPR_8
TPR_19
PPR_long
PPR_3
PPR
PPR_3
RNPP_C
TPR_19
TPR_17
PPR_2
PPR
PPR_1
Coatomer_E
Vps39_1
TPR_14
TPR_7
TPR_8
PPR_1
PPR_3
PPR_2
PPR
RNPP_C
PPR_3
Vps39_1
RNPP_C
Coatomer_E
PPR_2
PPR
PPR_1
PPR_long
PPR_2
PPR_3
PPR
PPR_1
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR
TPR_14
TPR_19
TPR_17
TPR_7
TPR_10
PPR
PPR_2
PPR_1
DYW_deaminase
PPR

References:

TPR_7

TPR_14

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

TPR_10

Coatomer_E
10469566 Segregation of COPI-rich and anterograde-cargo-rich domains in endoplasmic-reticulum-to-Golgi transport complexes. Curr Biol 1999;9:821-824.

DYW_deaminase

RNPP_C

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_12

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PPR_1	PPR repeat	9.5E-05	12	23.80	73	86
PPR_3	Pentatricopeptide repeat domain	0.018	5	25.00	74	93
PPR_2	PPR repeat family	1.9E-08	25	30.00	74	121
PPR	PPR repeat	4.5E-06	17	25.00	78	107
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0052	6	27.00	96	227
PPR_3	Pentatricopeptide repeat domain	0.021	5	25.00	138	172
PPR_2	PPR repeat family	2.7E-06	18	30.00	145	177
TPR_19	Tetratricopeptide repeat	0.09	4	25.00	146	175
TPR_12	Tetratricopeptide repeat	0.23	2	30.10	146	171
PPR	PPR repeat	5.2E-05	14	25.00	149	175
Coatomer_E	Coatomer epsilon subunit	0.017	5	20.40	150	178
TPR_14	Tetratricopeptide repeat	0.67	1	23.50	151	182
TPR_10	Tetratricopeptide repeat	0.27	2	27.50	155	171
PPR_1	PPR repeat	0.0038	7	23.80	159	171
PPR_1	PPR repeat	1.9E-05	15	23.80	176	204
PPR_3	Pentatricopeptide repeat domain	5E-05	14	25.00	176	210
PPR_2	PPR repeat family	2.8E-13	40	30.00	176	213
PPR	PPR repeat	7.6E-11	32	25.00	178	208
Vps39_1	Vacuolar sorting protein 39 domain 1	0.0026	8	21.40	179	210
TPR_14	Tetratricopeptide repeat	0.00095	10	23.50	179	207
DYW_deaminase	DYW family of nucleic acid deaminases	0.59	0	31.60	183	215
TPR_7	Tetratricopeptide repeat	0.017	6	27.90	187	206
TPR_10	Tetratricopeptide repeat	0.04	4	27.50	187	206
TPR_12	Tetratricopeptide repeat	0.039	5	30.10	187	205
TPR_8	Tetratricopeptide repeat	0.32	2	25.70	187	205
TPR_19	Tetratricopeptide repeat	0.21	2	25.00	190	205
PPR_long	Pentacotripeptide-repeat region of PRORP	1.7E-05	14	27.00	194	278
PPR_3	Pentatricopeptide repeat domain	8.5E-06	16	25.00	199	241
PPR	PPR repeat	0.02	6	25.00	218	241
PPR_3	Pentatricopeptide repeat domain	0.0016	9	25.00	234	278
RNPP_C	RNPP family C-terminal domain	0.0062	6	26.50	236	276
TPR_19	Tetratricopeptide repeat	0.019	6	25.00	237	276
TPR_17	Tetratricopeptide repeat	0.7	1	24.40	245	267
PPR_2	PPR repeat family	2.3E-06	18	30.00	246	277
PPR	PPR repeat	5.3E-09	26	25.00	251	278
PPR_1	PPR repeat	1.9E-05	15	23.80	251	274
Coatomer_E	Coatomer epsilon subunit	0.33	0	20.40	251	310
Vps39_1	Vacuolar sorting protein 39 domain 1	0.64	1	21.40	252	307
TPR_14	Tetratricopeptide repeat	0.48	2	23.50	252	276
TPR_7	Tetratricopeptide repeat	0.081	3	27.90	253	271
TPR_8	Tetratricopeptide repeat	0.05	4	25.70	253	270
PPR_1	PPR repeat	7.5E-05	13	23.80	275	304
PPR_3	Pentatricopeptide repeat domain	0.24	2	25.00	275	311
PPR_2	PPR repeat family	1.4E-09	28	30.00	276	324
PPR	PPR repeat	2.2E-09	27	25.00	279	308
RNPP_C	RNPP family C-terminal domain	0.73	-1	26.50	283	309
PPR_3	Pentatricopeptide repeat domain	3.6E-05	14	25.00	340	379
Vps39_1	Vacuolar sorting protein 39 domain 1	0.47	1	21.40	342	377
RNPP_C	RNPP family C-terminal domain	0.046	3	26.50	343	375
Coatomer_E	Coatomer epsilon subunit	0.043	3	20.40	343	377
PPR_2	PPR repeat family	3.1E-07	21	30.00	348	378
PPR	PPR repeat	5.4E-08	23	25.00	351	379
PPR_1	PPR repeat	0.00011	12	23.80	352	375
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00018	11	27.00	354	422
PPR_2	PPR repeat family	6.5E-10	29	30.00	377	425
PPR_3	Pentatricopeptide repeat domain	0.0043	7	25.00	378	421
PPR	PPR repeat	0.00034	11	25.00	380	410
PPR_1	PPR repeat	0.017	5	23.80	383	402
PPR_1	PPR repeat	0.64	0	23.80	409	438
PPR	PPR repeat	0.032	5	25.00	416	438
PPR_1	PPR repeat	1.4E-05	15	23.80	447	476
PPR_2	PPR repeat family	0.0032	8	30.00	451	480
PPR	PPR repeat	7.8E-05	13	25.00	452	477
PPR_3	Pentatricopeptide repeat domain	0.0017	9	25.00	479	507
PPR_long	Pentacotripeptide-repeat region of PRORP	1	-1	27.00	479	547
PPR	PPR repeat	0.075	4	25.00	484	509
TPR_14	Tetratricopeptide repeat	0.04	5	23.50	485	522
TPR_19	Tetratricopeptide repeat	0.0018	9	25.00	497	538
TPR_17	Tetratricopeptide repeat	0.0015	9	24.40	506	535
TPR_7	Tetratricopeptide repeat	0.091	3	27.90	519	539
TPR_10	Tetratricopeptide repeat	0.14	2	27.50	520	537
PPR	PPR repeat	0.00066	10	25.00	524	546
PPR_2	PPR repeat family	0.14	3	30.00	529	547
PPR_1	PPR repeat	0.12	2	23.80	530	542
DYW_deaminase	DYW family of nucleic acid deaminases	0	139	31.60	551	674
PPR	PPR repeat	0.86	0	25.00	645	661