c2pfam

AT3G08990.1 :

Domain Description Evalue Bits GA Start End
PyrI_C Aspartate carbamoyltransferase regulatory chain, metal binding domain 5.6E-05 12 20.80 5 23
C1_4 TFIIH C1-like domain 0.0001 11 24.60 10 29
Yippee-Mis18 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 1.6E-20 62 26.50 13 105
RIG-I_C-RD C-terminal domain of RIG-I 3.4E-07 19 24.60 14 84
RNA_pol_N RNA polymerases N / 8 kDa subunit 0.37 0 24.70 14 31
zf-ribbon_3 zinc-ribbon domain 0.022 3 27.00 16 21
C1_4 TFIIH C1-like domain 0.17 1 24.60 68 75
zf-ribbon_3 zinc-ribbon domain 0.0016 7 27.00 70 77
RNA_pol_N RNA polymerases N / 8 kDa subunit 0.00022 10 24.70 70 102

128

PyrI_C
C1_4
Yippee-Mis18
RIG-I_C-RD
RNA_pol_N
zf-ribbon_3
C1_4
zf-ribbon_3
RNA_pol_N

References:

RIG-I_C-RD
18243112 The C-terminal regulatory domain is the RNA 5'-triphosphate sensor of RIG-I. Mol Cell. 2008;29:169-179.

zf-ribbon_3

PyrI_C
364472 Three-dimensional structures of aspartate carbamoyltransferase from Escherichia coli and of its complex with cytidine triphosphate. Proc Natl Acad Sci U S A 1978;75:5276-5280.
10651286 Insights into the mechanisms of catalysis and heterotropic regulation of Escherichia coli aspartate transcarbamoylase based upon a structure of the enzyme complexed with the bisubstrate analogue N-phosphonacetyl-L-aspartate at 2.1 A. Proteins 1999;37:729-742.

Yippee-Mis18

RNA_pol_N

C1_4
10882739 Structural characterization of the cysteine-rich domain of TFIIH p44 subunit. J Biol Chem 2000;275:31963-31971.

Domain	Description	Evalue	Bits	GA	Start	End
PyrI_C	Aspartate carbamoyltransferase regulatory chain, metal binding domain	5.6E-05	12	20.80	5	23
C1_4	TFIIH C1-like domain	0.0001	11	24.60	10	29
Yippee-Mis18	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly	1.6E-20	62	26.50	13	105
RIG-I_C-RD	C-terminal domain of RIG-I	3.4E-07	19	24.60	14	84
RNA_pol_N	RNA polymerases N / 8 kDa subunit	0.37	0	24.70	14	31
zf-ribbon_3	zinc-ribbon domain	0.022	3	27.00	16	21
C1_4	TFIIH C1-like domain	0.17	1	24.60	68	75
zf-ribbon_3	zinc-ribbon domain	0.0016	7	27.00	70	77
RNA_pol_N	RNA polymerases N / 8 kDa subunit	0.00022	10	24.70	70	102