c2pfam

AT3G09040.1 :

Domain Description Evalue Bits GA Start End
RPN7 26S proteasome subunit RPN7 0.86 0 25.30 99 136
PPR_3 Pentatricopeptide repeat domain 0.00021 12 25.00 121 171
PPR_2 PPR repeat family 9.7E-10 29 30.00 123 172
PPR PPR repeat 0.00096 10 25.00 127 148
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.24 0 25.90 140 182
PPR_1 PPR repeat 0.032 4 23.80 156 176
PPR PPR repeat 0.018 6 25.00 161 191
PPR_long Pentacotripeptide-repeat region of PRORP 0.089 2 27.00 164 289
PPR_1 PPR repeat 0.089 3 23.80 193 219
PPR PPR repeat 0.026 5 25.00 200 219
PPR_2 PPR repeat family 0.12 3 30.00 200 221
PPR_1 PPR repeat 8.5E-07 19 23.80 222 253
PPR_3 Pentatricopeptide repeat domain 2.9E-05 15 25.00 223 271
PPR_2 PPR repeat family 2.3E-12 37 30.00 224 271
PPR PPR repeat 1.2E-10 32 25.00 227 256
TPR_14 Tetratricopeptide repeat 0.015 7 23.50 229 263
RPN7 26S proteasome subunit RPN7 0.083 3 25.30 232 263
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.45 1 27.20 236 285
TPR_19 Tetratricopeptide repeat 0.053 5 25.00 238 283
PPR_1 PPR repeat 0.0001 13 23.80 256 288
PPR PPR repeat 0.00013 13 25.00 264 288
PPR_2 PPR repeat family 0.0086 7 30.00 265 288
TPR_2 Tetratricopeptide repeat 0.38 2 22.40 269 285
PPR_1 PPR repeat 0.0021 8 23.80 289 306
PPR_3 Pentatricopeptide repeat domain 0.017 6 25.00 290 338
PPR_2 PPR repeat family 1.2E-07 22 30.00 290 335
PPR PPR repeat 9.4E-07 19 25.00 293 322
RNPP_C RNPP family C-terminal domain 0.037 4 26.50 342 388
PPR_3 Pentatricopeptide repeat domain 0.049 4 25.00 352 391
PPR_1 PPR repeat 0.48 1 23.80 366 386
PPR PPR repeat 0.00051 11 25.00 366 392
PPR_2 PPR repeat family 0.0075 7 30.00 367 391
PPR_2 PPR repeat family 1.2E-15 48 30.00 391 439
PPR_1 PPR repeat 0.015 6 23.80 392 420
PPR PPR repeat 1.2E-10 32 25.00 394 423
PPR_3 Pentatricopeptide repeat domain 5.4E-05 14 25.00 396 438
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.041 3 25.90 398 515
PPR_long Pentacotripeptide-repeat region of PRORP 0.00028 11 27.00 409 489
PPR_1 PPR repeat 0.42 1 23.80 423 436
PPR PPR repeat 0.69 1 25.00 429 452
RNPP_C RNPP family C-terminal domain 0.04 4 26.50 459 492
PPR_2 PPR repeat family 8.4E-05 13 30.00 462 492
AEP1 ATPase expression protein 1 0.019 4 27.00 465 506
TPR_10 Tetratricopeptide repeat 0.18 2 27.50 467 488
PPR PPR repeat 3.1E-06 18 25.00 467 492
PPR_1 PPR repeat 0.00025 11 23.80 467 489
PPR_3 Pentatricopeptide repeat domain 0.021 5 25.00 467 489
TPR_14 Tetratricopeptide repeat 0.069 5 23.50 468 492
TPR_19 Tetratricopeptide repeat 0.39 2 25.00 468 488
RPN7 26S proteasome subunit RPN7 0.094 3 25.30 468 491
PPR_1 PPR repeat 3.7E-06 17 23.80 490 520
PPR_2 PPR repeat family 1.6E-08 25 30.00 493 528
PPR_3 Pentatricopeptide repeat domain 0.019 6 25.00 494 521
PPR PPR repeat 9.8E-09 26 25.00 495 525
PPR_long Pentacotripeptide-repeat region of PRORP 0.17 2 27.00 509 542
PPR_1 PPR repeat 0.0078 6 23.80 559 588
PPR_2 PPR repeat family 0.01 7 30.00 565 595
PPR PPR repeat 0.001 10 25.00 568 592
PPR_3 Pentatricopeptide repeat domain 1.7E-05 15 25.00 593 639
PPR_2 PPR repeat family 2.5E-13 41 30.00 594 640
PPR PPR repeat 1.1E-05 16 25.00 596 625
PPR_1 PPR repeat 0.0028 8 23.80 599 620
PPR_long Pentacotripeptide-repeat region of PRORP 0.0043 7 27.00 604 642
TPR_10 Tetratricopeptide repeat 0.092 3 27.50 605 622
TPR_1 Tetratricopeptide repeat 0.15 3 20.40 605 621
TPR_11 TPR repeat 0.27 2 26.80 605 618
TPR_2 Tetratricopeptide repeat 0.28 2 22.40 605 621
TPR_14 Tetratricopeptide repeat 0.51 2 23.50 606 631
PPR_1 PPR repeat 0.054 4 23.80 623 638
PPR_2 PPR repeat family 0.12 3 30.00 671 691
PPR_2 PPR repeat family 2.9E-12 37 30.00 696 742
PPR_3 Pentatricopeptide repeat domain 0.00079 10 25.00 697 742
PPR_1 PPR repeat 0.0051 7 23.80 698 724
PPR PPR repeat 2.3E-10 31 25.00 698 728
BTAD Bacterial transcriptional activator domain 0.69 1 21.00 699 725
TPR_10 Tetratricopeptide repeat 0.8 0 27.50 707 722
TPR_2 Tetratricopeptide repeat 0.084 4 22.40 709 722
RPN7 26S proteasome subunit RPN7 0.64 0 25.30 709 732
TPR_19 Tetratricopeptide repeat 0.86 1 25.00 710 726
TPR_11 TPR repeat 0.99 0 26.80 710 722
TPR_1 Tetratricopeptide repeat 0.21 2 20.40 713 722
PPR_long Pentacotripeptide-repeat region of PRORP 1.8E-07 21 27.00 713 850
AEP1 ATPase expression protein 1 0.023 4 27.00 760 809
BTAD Bacterial transcriptional activator domain 0.8 0 21.00 762 796
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.048 3 25.90 765 795
PPR_1 PPR repeat 1.9E-06 18 23.80 766 794
PPR_3 Pentatricopeptide repeat domain 0.0053 7 25.00 768 795
PPR_2 PPR repeat family 1.5E-06 19 30.00 768 797
PPR PPR repeat 4.1E-08 24 25.00 769 796
RPN7 26S proteasome subunit RPN7 0.15 2 25.30 771 796
PPR_3 Pentatricopeptide repeat domain 1.2E-09 29 25.00 797 844
PPR_1 PPR repeat 2E-10 31 23.80 798 826
PPR_2 PPR repeat family 1.9E-15 47 30.00 798 845
RNPP_C RNPP family C-terminal domain 0.043 4 26.50 798 826
PPR PPR repeat 2.4E-12 37 25.00 800 828
BTAD Bacterial transcriptional activator domain 0.081 4 21.00 802 827
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.77 -1 25.90 804 860
PPR_1 PPR repeat 0.15 2 23.80 830 860
PPR PPR repeat 0.00063 11 25.00 836 861
PPR PPR repeat 0.18 3 25.00 875 893
TPR_14 Tetratricopeptide repeat 0.38 2 23.50 903 942
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.0048 8 27.20 925 958
TPR_17 Tetratricopeptide repeat 1.3E-05 16 24.40 926 955
TPR_19 Tetratricopeptide repeat 0.012 7 25.00 926 958
TPR_11 TPR repeat 0.015 6 26.80 927 950
TPR_2 Tetratricopeptide repeat 0.035 5 22.40 938 955
PPR PPR repeat 0.00061 11 25.00 938 967
PPR_2 PPR repeat family 0.058 4 30.00 944 968
DYW_deaminase DYW family of nucleic acid deaminases 1E-06 19 31.60 971 1016

1028

RPN7
PPR_3
PPR_2
PPR
MRP-S27
PPR_1
PPR
PPR_long
PPR_1
PPR
PPR_2
PPR_1
PPR_3
PPR_2
PPR
TPR_14
RPN7
ANAPC3
TPR_19
PPR_1
PPR
PPR_2
TPR_2
PPR_1
PPR_3
PPR_2
PPR
RNPP_C
PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR_1
PPR
PPR_3
MRP-S27
PPR_long
PPR_1
PPR
RNPP_C
PPR_2
AEP1
TPR_10
PPR
PPR_1
PPR_3
TPR_14
TPR_19
RPN7
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_1
PPR_long
TPR_10
TPR_1
TPR_11
TPR_2
TPR_14
PPR_1
PPR_2
PPR_2
PPR_3
PPR_1
PPR
BTAD
TPR_10
TPR_2
RPN7
TPR_19
TPR_11
TPR_1
PPR_long
AEP1
BTAD
MRP-S27
PPR_1
PPR_3
PPR_2
PPR
RPN7
PPR_3
PPR_1
PPR_2
RNPP_C
PPR
BTAD
MRP-S27
PPR_1
PPR
PPR
TPR_14
ANAPC3
TPR_17
TPR_19
TPR_11
TPR_2
PPR
PPR_2
DYW_deaminase

References:

AEP1

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_14

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

TPR_11

TPR_10

TPR_17

ANAPC3

DYW_deaminase

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

RNPP_C

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
RPN7	26S proteasome subunit RPN7	0.86	0	25.30	99	136
PPR_3	Pentatricopeptide repeat domain	0.00021	12	25.00	121	171
PPR_2	PPR repeat family	9.7E-10	29	30.00	123	172
PPR	PPR repeat	0.00096	10	25.00	127	148
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.24	0	25.90	140	182
PPR_1	PPR repeat	0.032	4	23.80	156	176
PPR	PPR repeat	0.018	6	25.00	161	191
PPR_long	Pentacotripeptide-repeat region of PRORP	0.089	2	27.00	164	289
PPR_1	PPR repeat	0.089	3	23.80	193	219
PPR	PPR repeat	0.026	5	25.00	200	219
PPR_2	PPR repeat family	0.12	3	30.00	200	221
PPR_1	PPR repeat	8.5E-07	19	23.80	222	253
PPR_3	Pentatricopeptide repeat domain	2.9E-05	15	25.00	223	271
PPR_2	PPR repeat family	2.3E-12	37	30.00	224	271
PPR	PPR repeat	1.2E-10	32	25.00	227	256
TPR_14	Tetratricopeptide repeat	0.015	7	23.50	229	263
RPN7	26S proteasome subunit RPN7	0.083	3	25.30	232	263
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.45	1	27.20	236	285
TPR_19	Tetratricopeptide repeat	0.053	5	25.00	238	283
PPR_1	PPR repeat	0.0001	13	23.80	256	288
PPR	PPR repeat	0.00013	13	25.00	264	288
PPR_2	PPR repeat family	0.0086	7	30.00	265	288
TPR_2	Tetratricopeptide repeat	0.38	2	22.40	269	285
PPR_1	PPR repeat	0.0021	8	23.80	289	306
PPR_3	Pentatricopeptide repeat domain	0.017	6	25.00	290	338
PPR_2	PPR repeat family	1.2E-07	22	30.00	290	335
PPR	PPR repeat	9.4E-07	19	25.00	293	322
RNPP_C	RNPP family C-terminal domain	0.037	4	26.50	342	388
PPR_3	Pentatricopeptide repeat domain	0.049	4	25.00	352	391
PPR_1	PPR repeat	0.48	1	23.80	366	386
PPR	PPR repeat	0.00051	11	25.00	366	392
PPR_2	PPR repeat family	0.0075	7	30.00	367	391
PPR_2	PPR repeat family	1.2E-15	48	30.00	391	439
PPR_1	PPR repeat	0.015	6	23.80	392	420
PPR	PPR repeat	1.2E-10	32	25.00	394	423
PPR_3	Pentatricopeptide repeat domain	5.4E-05	14	25.00	396	438
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.041	3	25.90	398	515
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00028	11	27.00	409	489
PPR_1	PPR repeat	0.42	1	23.80	423	436
PPR	PPR repeat	0.69	1	25.00	429	452
RNPP_C	RNPP family C-terminal domain	0.04	4	26.50	459	492
PPR_2	PPR repeat family	8.4E-05	13	30.00	462	492
AEP1	ATPase expression protein 1	0.019	4	27.00	465	506
TPR_10	Tetratricopeptide repeat	0.18	2	27.50	467	488
PPR	PPR repeat	3.1E-06	18	25.00	467	492
PPR_1	PPR repeat	0.00025	11	23.80	467	489
PPR_3	Pentatricopeptide repeat domain	0.021	5	25.00	467	489
TPR_14	Tetratricopeptide repeat	0.069	5	23.50	468	492
TPR_19	Tetratricopeptide repeat	0.39	2	25.00	468	488
RPN7	26S proteasome subunit RPN7	0.094	3	25.30	468	491
PPR_1	PPR repeat	3.7E-06	17	23.80	490	520
PPR_2	PPR repeat family	1.6E-08	25	30.00	493	528
PPR_3	Pentatricopeptide repeat domain	0.019	6	25.00	494	521
PPR	PPR repeat	9.8E-09	26	25.00	495	525
PPR_long	Pentacotripeptide-repeat region of PRORP	0.17	2	27.00	509	542
PPR_1	PPR repeat	0.0078	6	23.80	559	588
PPR_2	PPR repeat family	0.01	7	30.00	565	595
PPR	PPR repeat	0.001	10	25.00	568	592
PPR_3	Pentatricopeptide repeat domain	1.7E-05	15	25.00	593	639
PPR_2	PPR repeat family	2.5E-13	41	30.00	594	640
PPR	PPR repeat	1.1E-05	16	25.00	596	625
PPR_1	PPR repeat	0.0028	8	23.80	599	620
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0043	7	27.00	604	642
TPR_10	Tetratricopeptide repeat	0.092	3	27.50	605	622
TPR_1	Tetratricopeptide repeat	0.15	3	20.40	605	621
TPR_11	TPR repeat	0.27	2	26.80	605	618
TPR_2	Tetratricopeptide repeat	0.28	2	22.40	605	621
TPR_14	Tetratricopeptide repeat	0.51	2	23.50	606	631
PPR_1	PPR repeat	0.054	4	23.80	623	638
PPR_2	PPR repeat family	0.12	3	30.00	671	691
PPR_2	PPR repeat family	2.9E-12	37	30.00	696	742
PPR_3	Pentatricopeptide repeat domain	0.00079	10	25.00	697	742
PPR_1	PPR repeat	0.0051	7	23.80	698	724
PPR	PPR repeat	2.3E-10	31	25.00	698	728
BTAD	Bacterial transcriptional activator domain	0.69	1	21.00	699	725
TPR_10	Tetratricopeptide repeat	0.8	0	27.50	707	722
TPR_2	Tetratricopeptide repeat	0.084	4	22.40	709	722
RPN7	26S proteasome subunit RPN7	0.64	0	25.30	709	732
TPR_19	Tetratricopeptide repeat	0.86	1	25.00	710	726
TPR_11	TPR repeat	0.99	0	26.80	710	722
TPR_1	Tetratricopeptide repeat	0.21	2	20.40	713	722
PPR_long	Pentacotripeptide-repeat region of PRORP	1.8E-07	21	27.00	713	850
AEP1	ATPase expression protein 1	0.023	4	27.00	760	809
BTAD	Bacterial transcriptional activator domain	0.8	0	21.00	762	796
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.048	3	25.90	765	795
PPR_1	PPR repeat	1.9E-06	18	23.80	766	794
PPR_3	Pentatricopeptide repeat domain	0.0053	7	25.00	768	795
PPR_2	PPR repeat family	1.5E-06	19	30.00	768	797
PPR	PPR repeat	4.1E-08	24	25.00	769	796
RPN7	26S proteasome subunit RPN7	0.15	2	25.30	771	796
PPR_3	Pentatricopeptide repeat domain	1.2E-09	29	25.00	797	844
PPR_1	PPR repeat	2E-10	31	23.80	798	826
PPR_2	PPR repeat family	1.9E-15	47	30.00	798	845
RNPP_C	RNPP family C-terminal domain	0.043	4	26.50	798	826
PPR	PPR repeat	2.4E-12	37	25.00	800	828
BTAD	Bacterial transcriptional activator domain	0.081	4	21.00	802	827
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.77	-1	25.90	804	860
PPR_1	PPR repeat	0.15	2	23.80	830	860
PPR	PPR repeat	0.00063	11	25.00	836	861
PPR	PPR repeat	0.18	3	25.00	875	893
TPR_14	Tetratricopeptide repeat	0.38	2	23.50	903	942
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.0048	8	27.20	925	958
TPR_17	Tetratricopeptide repeat	1.3E-05	16	24.40	926	955
TPR_19	Tetratricopeptide repeat	0.012	7	25.00	926	958
TPR_11	TPR repeat	0.015	6	26.80	927	950
TPR_2	Tetratricopeptide repeat	0.035	5	22.40	938	955
PPR	PPR repeat	0.00061	11	25.00	938	967
PPR_2	PPR repeat family	0.058	4	30.00	944	968
DYW_deaminase	DYW family of nucleic acid deaminases	1E-06	19	31.60	971	1016