c2pfam

AT3G10910.1 :

Domain Description Evalue Bits GA Start End
HemY_N HemY protein N-terminus 7E-05 14 28.20 26 96
APOBEC1 APOBEC1 0.43 1 27.00 38 70
Prok-RING_1 Prokaryotic RING finger family 1 6.1E-05 14 29.10 110 142
FANCL_C FANCL C-terminal domain 1.1E-05 16 20.70 111 151
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 1.9E-07 21 27.00 112 158
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 8.9E-05 13 27.30 112 154
zf-RING_5 zinc-RING finger domain 3.3E-08 24 27.90 113 157
zf-RING_2 Ring finger domain 6.3E-17 52 27.30 113 156
zf-RING_11 RING-like zinc finger 5.5E-15 45 27.00 113 142
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.1E-12 38 27.00 113 155
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 6.7E-09 26 21.00 114 155
zf-RING_UBOX RING-type zinc-finger 1.3E-06 19 25.20 114 153
Prok-RING_4 Prokaryotic RING finger family 4 9.2E-06 16 27.00 114 159
zf-RING_4 RING/Ubox like zinc-binding domain 0.00019 12 27.00 114 157
PHD PHD-finger 0.00075 10 27.90 114 157
RINGv RING-variant domain 0.00075 10 21.60 114 155
zf-rbx1 RING-H2 zinc finger domain 2.5E-12 38 31.00 126 156
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 3.3E-09 27 21.40 129 161
zf-RING-like RING-like domain 0.0001 13 21.60 132 155
zf-C3H2C3 Zinc-finger 0.0011 10 27.00 132 155
APOBEC1 APOBEC1 0.0022 9 27.00 138 158
Tmpp129 Putative transmembrane protein precursor 0.00017 11 19.10 142 158
Prok-RING_1 Prokaryotic RING finger family 1 0.12 3 29.10 150 160

181

HemY_N
APOBEC1
Prok-RING_1
FANCL_C
zf-C3HC4_3
Zn_ribbon_17
zf-RING_5
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
Prok-RING_4
zf-RING_4
PHD
RINGv
zf-rbx1
zf-ANAPC11
zf-RING-like
zf-C3H2C3
APOBEC1
Tmpp129
Prok-RING_1

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

Prok-RING_4

zf-C3H2C3

RINGv

APOBEC1

zf-ANAPC11

zf-RING_4

zf-RING_UBOX

zf-RING_5

Zn_ribbon_17

zf-RING_2

zf-rbx1

zf-RING-like

zf-RING_11

Tmpp129

zf-C3HC4_3

zf-C3HC4_2

HemY_N
7928957 Bacillus subtilis HemY is a peripheral membrane protein essential for protoheme IX synthesis which can oxidize coproporphyrinogen III and protoporphyrinogen IX. J Bacteriol 1994;176:5962-5970.

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
HemY_N	HemY protein N-terminus	7E-05	14	28.20	26	96
APOBEC1	APOBEC1	0.43	1	27.00	38	70
Prok-RING_1	Prokaryotic RING finger family 1	6.1E-05	14	29.10	110	142
FANCL_C	FANCL C-terminal domain	1.1E-05	16	20.70	111	151
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	1.9E-07	21	27.00	112	158
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	8.9E-05	13	27.30	112	154
zf-RING_5	zinc-RING finger domain	3.3E-08	24	27.90	113	157
zf-RING_2	Ring finger domain	6.3E-17	52	27.30	113	156
zf-RING_11	RING-like zinc finger	5.5E-15	45	27.00	113	142
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1.1E-12	38	27.00	113	155
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	6.7E-09	26	21.00	114	155
zf-RING_UBOX	RING-type zinc-finger	1.3E-06	19	25.20	114	153
Prok-RING_4	Prokaryotic RING finger family 4	9.2E-06	16	27.00	114	159
zf-RING_4	RING/Ubox like zinc-binding domain	0.00019	12	27.00	114	157
PHD	PHD-finger	0.00075	10	27.90	114	157
RINGv	RING-variant domain	0.00075	10	21.60	114	155
zf-rbx1	RING-H2 zinc finger domain	2.5E-12	38	31.00	126	156
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	3.3E-09	27	21.40	129	161
zf-RING-like	RING-like domain	0.0001	13	21.60	132	155
zf-C3H2C3	Zinc-finger	0.0011	10	27.00	132	155
APOBEC1	APOBEC1	0.0022	9	27.00	138	158
Tmpp129	Putative transmembrane protein precursor	0.00017	11	19.10	142	158
Prok-RING_1	Prokaryotic RING finger family 1	0.12	3	29.10	150	160