c2pfam

AT3G11460.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 1.5E-05 14 30.00 21 64
PPR PPR repeat 0.019 5 25.00 21 48
PPR_1 PPR repeat 2.5E-08 23 23.80 89 113
PPR PPR repeat 7.2E-07 19 25.00 91 113
PPR_2 PPR repeat family 3.7E-05 13 30.00 92 113
PPR_long Pentacotripeptide-repeat region of PRORP 0.18 0 27.00 120 167
PPR_2 PPR repeat family 9.4E-11 31 30.00 121 159
PPR PPR repeat 1.8E-08 24 25.00 122 152
PPR_1 PPR repeat 1.2E-06 17 23.80 122 148
PPR_3 Pentatricopeptide repeat domain 8.9E-06 15 25.00 122 153
PPR_3 Pentatricopeptide repeat domain 0.03 4 25.00 181 232
PPR_2 PPR repeat family 3.3E-06 17 30.00 191 222
PPR PPR repeat 1.7E-06 17 25.00 194 222
PPR_1 PPR repeat 0.0056 6 23.80 194 217
PPR_3 Pentatricopeptide repeat domain 0.00033 10 25.00 221 265
PPR_2 PPR repeat family 5.9E-13 38 30.00 222 268
PPR PPR repeat 1.8E-11 33 25.00 223 253
PPR_1 PPR repeat 0.00057 9 23.80 223 249
PPR_long Pentacotripeptide-repeat region of PRORP 0.00014 10 27.00 235 318
PPR_3 Pentatricopeptide repeat domain 1.7E-05 14 25.00 244 302
PPR_1 PPR repeat 1 -2 23.80 252 259
PPR_3 Pentatricopeptide repeat domain 0.0047 6 25.00 283 318
PPR_1 PPR repeat 7.3E-05 12 23.80 286 318
PPR_2 PPR repeat family 3.2E-05 13 30.00 290 322
PPR PPR repeat 0.00022 11 25.00 299 320
TPR_14 Tetratricopeptide repeat 0.22 2 23.50 301 316
TPR_4 Tetratricopeptide repeat 0.046 4 22.00 302 315
PPR_2 PPR repeat family 5E-11 32 30.00 322 369
PPR PPR repeat 4E-10 29 25.00 324 354
PPR_1 PPR repeat 0.39 0 23.80 324 349
PPR_long Pentacotripeptide-repeat region of PRORP 6.9E-05 11 27.00 344 420
PPR_3 Pentatricopeptide repeat domain 4.1E-06 16 25.00 345 405
PPR_1 PPR repeat 0.097 2 23.80 353 385
PPR PPR repeat 4.1E-06 16 25.00 362 387
PPR_2 PPR repeat family 0.00031 10 30.00 363 402
TPR_14 Tetratricopeptide repeat 0.68 1 23.50 363 384
PPR_1 PPR repeat 3.6E-08 22 23.80 396 420
PPR PPR repeat 7.7E-07 18 25.00 396 421
TPR_4 Tetratricopeptide repeat 0.0033 8 22.00 396 418
PPR_2 PPR repeat family 0.0032 7 30.00 397 421
TPR_14 Tetratricopeptide repeat 0.016 6 23.50 397 418
PPR_3 Pentatricopeptide repeat domain 0.0057 6 25.00 422 468
TPR_14 Tetratricopeptide repeat 0.11 3 23.50 428 466
PPR PPR repeat 0.044 4 25.00 428 452
DYW_deaminase DYW family of nucleic acid deaminases 2E-28 88 31.60 495 613

623

PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_long
PPR_2
PPR
PPR_1
PPR_3
PPR_3
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_long
PPR_3
PPR_1
PPR_3
PPR_1
PPR_2
PPR
TPR_14
TPR_4
PPR_2
PPR
PPR_1
PPR_long
PPR_3
PPR_1
PPR
PPR_2
TPR_14
PPR_1
PPR
TPR_4
PPR_2
TPR_14
PPR_3
TPR_14
PPR
DYW_deaminase

References:

DYW_deaminase

TPR_4

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	1.5E-05	14	30.00	21	64
PPR	PPR repeat	0.019	5	25.00	21	48
PPR_1	PPR repeat	2.5E-08	23	23.80	89	113
PPR	PPR repeat	7.2E-07	19	25.00	91	113
PPR_2	PPR repeat family	3.7E-05	13	30.00	92	113
PPR_long	Pentacotripeptide-repeat region of PRORP	0.18	0	27.00	120	167
PPR_2	PPR repeat family	9.4E-11	31	30.00	121	159
PPR	PPR repeat	1.8E-08	24	25.00	122	152
PPR_1	PPR repeat	1.2E-06	17	23.80	122	148
PPR_3	Pentatricopeptide repeat domain	8.9E-06	15	25.00	122	153
PPR_3	Pentatricopeptide repeat domain	0.03	4	25.00	181	232
PPR_2	PPR repeat family	3.3E-06	17	30.00	191	222
PPR	PPR repeat	1.7E-06	17	25.00	194	222
PPR_1	PPR repeat	0.0056	6	23.80	194	217
PPR_3	Pentatricopeptide repeat domain	0.00033	10	25.00	221	265
PPR_2	PPR repeat family	5.9E-13	38	30.00	222	268
PPR	PPR repeat	1.8E-11	33	25.00	223	253
PPR_1	PPR repeat	0.00057	9	23.80	223	249
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00014	10	27.00	235	318
PPR_3	Pentatricopeptide repeat domain	1.7E-05	14	25.00	244	302
PPR_1	PPR repeat	1	-2	23.80	252	259
PPR_3	Pentatricopeptide repeat domain	0.0047	6	25.00	283	318
PPR_1	PPR repeat	7.3E-05	12	23.80	286	318
PPR_2	PPR repeat family	3.2E-05	13	30.00	290	322
PPR	PPR repeat	0.00022	11	25.00	299	320
TPR_14	Tetratricopeptide repeat	0.22	2	23.50	301	316
TPR_4	Tetratricopeptide repeat	0.046	4	22.00	302	315
PPR_2	PPR repeat family	5E-11	32	30.00	322	369
PPR	PPR repeat	4E-10	29	25.00	324	354
PPR_1	PPR repeat	0.39	0	23.80	324	349
PPR_long	Pentacotripeptide-repeat region of PRORP	6.9E-05	11	27.00	344	420
PPR_3	Pentatricopeptide repeat domain	4.1E-06	16	25.00	345	405
PPR_1	PPR repeat	0.097	2	23.80	353	385
PPR	PPR repeat	4.1E-06	16	25.00	362	387
PPR_2	PPR repeat family	0.00031	10	30.00	363	402
TPR_14	Tetratricopeptide repeat	0.68	1	23.50	363	384
PPR_1	PPR repeat	3.6E-08	22	23.80	396	420
PPR	PPR repeat	7.7E-07	18	25.00	396	421
TPR_4	Tetratricopeptide repeat	0.0033	8	22.00	396	418
PPR_2	PPR repeat family	0.0032	7	30.00	397	421
TPR_14	Tetratricopeptide repeat	0.016	6	23.50	397	418
PPR_3	Pentatricopeptide repeat domain	0.0057	6	25.00	422	468
TPR_14	Tetratricopeptide repeat	0.11	3	23.50	428	466
PPR	PPR repeat	0.044	4	25.00	428	452
DYW_deaminase	DYW family of nucleic acid deaminases	2E-28	88	31.60	495	613