c2pfam

AT3G11820.1 :

Domain Description Evalue Bits GA Start End
DUF1664 Protein of unknown function (DUF1664) 0.00034 11 30.00 41 97
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 0.37 1 30.00 43 74
Syntaxin Syntaxin 0 240 25.00 44 249
Synaptobrevin Synaptobrevin 0.59 1 25.00 44 88
DUF5790 Family of unknown function (DUF5790) 0.00026 12 26.80 47 91
NPV_P10 Nucleopolyhedrovirus P10 protein 0.0048 8 29.80 49 87
DASH_Dam1 DASH complex subunit Dam1 0.12 3 21.40 49 70
CK2S Casein Kinase 2 substrate 0.032 5 27.00 52 84
Helo_like_N Fungal N-terminal domain of STAND proteins 0.14 2 27.20 53 76
IL22 Interleukin 22 IL-10-related T-cell-derived-inducible factor 0.00029 12 30.00 57 92
MutS_III MutS domain III 0.18 3 22.50 57 153
Syntaxin_2 Syntaxin-like protein 0.0013 10 30.50 60 163
Enkurin Calmodulin-binding 0.0053 8 23.60 99 157
CK2S Casein Kinase 2 substrate 0.17 2 27.00 144 182
T2SSF Type II secretion system (T2SS), protein F 0.0012 9 25.20 198 302
NOG1_N NOG1 N-terminal helical domain 8.7E-05 13 22.90 200 237
CK2S Casein Kinase 2 substrate 0.023 5 27.00 201 282
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 0.0014 9 30.00 202 263
Syntaxin_2 Syntaxin-like protein 0.43 2 30.50 206 236
Desmo_N Viral Desmoplakin N-terminus 0.00019 12 25.00 210 258
DUF5790 Family of unknown function (DUF5790) 0.34 2 26.80 210 235
NPV_P10 Nucleopolyhedrovirus P10 protein 0.013 7 29.80 211 261
DUF1664 Protein of unknown function (DUF1664) 0.027 5 30.00 211 256
Helo_like_N Fungal N-terminal domain of STAND proteins 0.0011 9 27.20 211 261
MutS_III MutS domain III 0.00097 10 22.50 214 264
DASH_Dam1 DASH complex subunit Dam1 0.026 5 21.40 216 237
Enkurin Calmodulin-binding 0.024 6 23.60 216 248
Synaptobrevin Synaptobrevin 0.0014 9 25.00 222 304
SNARE SNARE domain 4.7E-22 68 30.00 251 302
SecG Preprotein translocase SecG subunit 0.00023 12 21.50 260 302
Pox_EPC_I2-L1 Poxvirus entry protein complex L1 and I2 0.0002 12 23.40 270 306
CD225 Interferon-induced transmembrane protein 0.00028 12 20.60 272 300
FeoB_associated FeoB-associated Cys-rich membrane protein 0.0014 10 27.00 291 315

346

DUF1664
MCPsignal
Syntaxin
Synaptobrevin
DUF5790
NPV_P10
DASH_Dam1
CK2S
Helo_like_N
IL22
MutS_III
Syntaxin_2
Enkurin
CK2S
T2SSF
NOG1_N
CK2S
MCPsignal
Syntaxin_2
Desmo_N
DUF5790
NPV_P10
DUF1664
Helo_like_N
MutS_III
DASH_Dam1
Enkurin
Synaptobrevin
SNARE
SecG
Pox_EPC_I2-L1
CD225
FeoB_associated

References:

MutS_III
9722634 Domain organization and functional analysis of Thermus thermophilus MutS protein [published erratum appears in Nucleic Acids Res 1998 Oct 15;26(20):following 4789] Nucleic Acids Res 1998;26:4153-4159.
8036718 Colon cancer and DNA repair: have mismatches met their match? Trends Genet 1994;10:164-168.
8510668 The yeast gene MSH3 defines a new class of eukaryotic MutS homologues. Mol Gen Genet 1993;239:97-108.
11048710 Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA. Nature 2000;407:703-710.

NPV_P10
9634101 The single-nucleocapsid nucleopolyhedrovirus of Buzura suppressaria encodes a P10 protein. J Gen Virol 1998;79:1553-1562.

DASH_Dam1
11799062 The mitotic spindle is required for loading of the DASH complex onto the kinetochore. Genes Dev 2002;16:183-197.
15640796 The yeast DASH complex forms closed rings on microtubules. Nat Struct Mol Biol. 2005;12:138-143.
15664196 Formation of a dynamic kinetochore- microtubule interface through assembly of the Dam1 ring complex. Mol Cell. 2005;17:277-290.
15632076 Genetic analysis of the kinetochore DASH complex reveals an antagonistic relationship with the ras/protein kinase A pathway and a novel subunit required for Ask1 association. Mol Cell Biol. 2005;25:767-778.

Enkurin

Helo_like_N

T2SSF

DUF1664

Syntaxin
11839791 Characterization of temperature-sensitive mutations in the yeast syntaxin 1 homologues Sso1p and Sso2p, and evidence of a distinct function for Sso1p in sporulation. J Cell Sci 2002;115:409-420.
11157748 t-SNARE dephosphorylation promotes SNARE assembly and exocytosis in yeast. EMBO J 2001;20:411-421.
11224573 Vam3p structure reveals conserved and divergent properties of syntaxins. Nat Struct Biol 2001;8:258-264.
11224554 The taming of the SNARE. Nat Struct Biol 2001;8:186-188.
12072456 Gene overexpression as a tool for identifying new trans-acting factors involved in translation termination in Saccharomyces cerevisiae. Genetics 2002;161:585-594.
11737951 The syntaxins. Genome Biol 2001;2:REVIEWS3012.

CK2S

Synaptobrevin

SNARE
9096343 A conserved domain is present in different families of vesicular fusion proteins: a new superfamily. Proc Natl Acad Sci U S A 1997;94:3046-3051.

DUF5790

Syntaxin_2

SecG

Desmo_N
11781580 Deconstructing desmoplakin. Nat Cell Biol 2001;12:270-272.

IL22

CD225
7559564 Expression cloning of an interferon-inducible 17-kDa membrane protein implicated in the control of cell growth. J Biol Chem 1995;270:23860-23866.

NOG1_N

MCPsignal
1601874 Sequence and characterization of Bacillus subtilis CheW. J Biol Chem 1992;267:12055-12060.

Pox_EPC_I2-L1

FeoB_associated

Domain	Description	Evalue	Bits	GA	Start	End
DUF1664	Protein of unknown function (DUF1664)	0.00034	11	30.00	41	97
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	0.37	1	30.00	43	74
Syntaxin	Syntaxin	0	240	25.00	44	249
Synaptobrevin	Synaptobrevin	0.59	1	25.00	44	88
DUF5790	Family of unknown function (DUF5790)	0.00026	12	26.80	47	91
NPV_P10	Nucleopolyhedrovirus P10 protein	0.0048	8	29.80	49	87
DASH_Dam1	DASH complex subunit Dam1	0.12	3	21.40	49	70
CK2S	Casein Kinase 2 substrate	0.032	5	27.00	52	84
Helo_like_N	Fungal N-terminal domain of STAND proteins	0.14	2	27.20	53	76
IL22	Interleukin 22 IL-10-related T-cell-derived-inducible factor	0.00029	12	30.00	57	92
MutS_III	MutS domain III	0.18	3	22.50	57	153
Syntaxin_2	Syntaxin-like protein	0.0013	10	30.50	60	163
Enkurin	Calmodulin-binding	0.0053	8	23.60	99	157
CK2S	Casein Kinase 2 substrate	0.17	2	27.00	144	182
T2SSF	Type II secretion system (T2SS), protein F	0.0012	9	25.20	198	302
NOG1_N	NOG1 N-terminal helical domain	8.7E-05	13	22.90	200	237
CK2S	Casein Kinase 2 substrate	0.023	5	27.00	201	282
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	0.0014	9	30.00	202	263
Syntaxin_2	Syntaxin-like protein	0.43	2	30.50	206	236
Desmo_N	Viral Desmoplakin N-terminus	0.00019	12	25.00	210	258
DUF5790	Family of unknown function (DUF5790)	0.34	2	26.80	210	235
NPV_P10	Nucleopolyhedrovirus P10 protein	0.013	7	29.80	211	261
DUF1664	Protein of unknown function (DUF1664)	0.027	5	30.00	211	256
Helo_like_N	Fungal N-terminal domain of STAND proteins	0.0011	9	27.20	211	261
MutS_III	MutS domain III	0.00097	10	22.50	214	264
DASH_Dam1	DASH complex subunit Dam1	0.026	5	21.40	216	237
Enkurin	Calmodulin-binding	0.024	6	23.60	216	248
Synaptobrevin	Synaptobrevin	0.0014	9	25.00	222	304
SNARE	SNARE domain	4.7E-22	68	30.00	251	302
SecG	Preprotein translocase SecG subunit	0.00023	12	21.50	260	302
Pox_EPC_I2-L1	Poxvirus entry protein complex L1 and I2	0.0002	12	23.40	270	306
CD225	Interferon-induced transmembrane protein	0.00028	12	20.60	272	300
FeoB_associated	FeoB-associated Cys-rich membrane protein	0.0014	10	27.00	291	315