c2pfam

AT3G11910.1 :

Domain Description Evalue Bits GA Start End
MATH MATH domain 1.6E-21 66 21.20 62 180
UCH Ubiquitin carboxyl-terminal hydrolase 0 159 20.50 198 519
UCH_1 Ubiquitin carboxyl-terminal hydrolase 2.2E-25 79 22.20 198 474
Malt_amylase_C Maltogenic Amylase, C-terminal domain 0.00026 11 27.00 506 540
USP7_C2 Ubiquitin-specific protease C-terminal 0.017 4 29.40 535 622
RA Ras association (RalGDS/AF-6) domain 0.16 2 20.60 593 647
ubiquitin Ubiquitin family 0.0002 11 20.70 596 625
UN_NPL4 Nuclear pore localisation protein NPL4 0.22 2 21.90 599 621
SASP Small, acid-soluble spore proteins, alpha/beta type 0.00016 11 20.60 604 620
USP7_ICP0_bdg ICP0-binding domain of Ubiquitin-specific protease 7 0 264 27.00 623 874
USP7_C2 Ubiquitin-specific protease C-terminal 0.0022 7 29.40 804 849
ubiquitin Ubiquitin family 0.3 1 20.70 812 840
RA Ras association (RalGDS/AF-6) domain 0.00063 10 20.60 818 857
USP7_C2 Ubiquitin-specific protease C-terminal 0 191 29.40 884 1093
RA Ras association (RalGDS/AF-6) domain 0.0048 7 20.60 903 945
USP7_ICP0_bdg ICP0-binding domain of Ubiquitin-specific protease 7 0.56 -1 27.00 917 954
UN_NPL4 Nuclear pore localisation protein NPL4 0.92 0 21.90 918 946
ubiquitin Ubiquitin family 0.0024 7 20.70 1016 1046
UN_NPL4 Nuclear pore localisation protein NPL4 0.018 5 21.90 1022 1047

1115

MATH
UCH
UCH_1
Malt_amylase_C
USP7_C2
RA
ubiquitin
UN_NPL4
SASP
USP7_ICP0_bdg
USP7_C2
ubiquitin
RA
USP7_C2
RA
USP7_ICP0_bdg
UN_NPL4
ubiquitin
UN_NPL4

References:

UCH

ubiquitin
3041007 Structure of ubiquitin refined at 1.8 A resolution. J Mol Biol 1987;194:531-544.
8107144 Structure of tetraubiquitin shows how multiubiquitin chains can be formed. J Mol Biol 1994;236:601-609.
9654451 Structure determination of the small ubiquitin-related modifier SUMO-1. J Mol Biol 1998;280:275-286.
9857030 Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes. J Biol Chem 1998;273:34983-34991.
12826399 A potential proteasome-interacting motif within the ubiquitin-like domain of parkin and other proteins. Trends Biochem Sci 2003;28:280-283.

USP7_ICP0_bdg

MATH
8755243 TRAF proteins and meprins share a conserved domain. Trends Biochem Sci 1996;21:244-245.
10411888 Crystallographic analysis of CD40 recognition and signaling by human TRAF2. Proc Natl Acad Sci U S A 1999;96:8408-8413.
9851918 Comparison of the complete protein sets of worm and yeast: orthology and divergence. Science 1998;282:2022-2028.

Malt_amylase_C

USP7_C2

SASP

UN_NPL4
17491009 Detailed structural insights into the p97-Npl4-Ufd1 interface. J Biol Chem. 2007;282:21361-21369.

RA
9253406 Three-dimensional structure of the Ras-interacting domain of RalGDS. Nat Struct Biol 1997;4:609-615.
7972015 Activated Ras interacts with the Ral guanine nucleotide dissociation stimulator. Proc Natl Acad Sci U S A 1994;91:11089-11093.
8987396 A novel family of Ras-binding domains. Trends Biochem Sci 1996;21:422-425.
8557659 Identification of AF-6 and canoe as putative targets for Ras. J Biol Chem 1996;271:607-610.

UCH_1

Domain	Description	Evalue	Bits	GA	Start	End
MATH	MATH domain	1.6E-21	66	21.20	62	180
UCH	Ubiquitin carboxyl-terminal hydrolase	0	159	20.50	198	519
UCH_1	Ubiquitin carboxyl-terminal hydrolase	2.2E-25	79	22.20	198	474
Malt_amylase_C	Maltogenic Amylase, C-terminal domain	0.00026	11	27.00	506	540
USP7_C2	Ubiquitin-specific protease C-terminal	0.017	4	29.40	535	622
RA	Ras association (RalGDS/AF-6) domain	0.16	2	20.60	593	647
ubiquitin	Ubiquitin family	0.0002	11	20.70	596	625
UN_NPL4	Nuclear pore localisation protein NPL4	0.22	2	21.90	599	621
SASP	Small, acid-soluble spore proteins, alpha/beta type	0.00016	11	20.60	604	620
USP7_ICP0_bdg	ICP0-binding domain of Ubiquitin-specific protease 7	0	264	27.00	623	874
USP7_C2	Ubiquitin-specific protease C-terminal	0.0022	7	29.40	804	849
ubiquitin	Ubiquitin family	0.3	1	20.70	812	840
RA	Ras association (RalGDS/AF-6) domain	0.00063	10	20.60	818	857
USP7_C2	Ubiquitin-specific protease C-terminal	0	191	29.40	884	1093
RA	Ras association (RalGDS/AF-6) domain	0.0048	7	20.60	903	945
USP7_ICP0_bdg	ICP0-binding domain of Ubiquitin-specific protease 7	0.56	-1	27.00	917	954
UN_NPL4	Nuclear pore localisation protein NPL4	0.92	0	21.90	918	946
ubiquitin	Ubiquitin family	0.0024	7	20.70	1016	1046
UN_NPL4	Nuclear pore localisation protein NPL4	0.018	5	21.90	1022	1047