c2pfam

AT3G12770.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.0068 6 25.00 48 79
PPR PPR repeat 0.34 1 25.00 59 79
PPR_3 Pentatricopeptide repeat domain 7.5E-05 12 25.00 82 130
PPR_2 PPR repeat family 1.3E-12 37 30.00 83 129
PPR PPR repeat 6.1E-07 19 25.00 87 111
PPR_1 PPR repeat 0.0039 6 23.80 87 110
BTAD Bacterial transcriptional activator domain 0.68 0 21.00 87 110
ATP13 Mitochondrial ATPase expression 0.015 5 26.70 88 110
PPR_1 PPR repeat 0.69 -1 23.80 115 126
PPR_3 Pentatricopeptide repeat domain 0.41 0 25.00 146 178
PPR_1 PPR repeat 0.41 0 23.80 149 178
PPR_2 PPR repeat family 0.11 2 30.00 153 178
PPR PPR repeat 0.026 4 25.00 158 178
BTAD Bacterial transcriptional activator domain 0.0048 7 21.00 181 215
PPR_2 PPR repeat family 6E-11 32 30.00 186 232
PPR_1 PPR repeat 2.9E-06 16 23.80 186 214
PPR_3 Pentatricopeptide repeat domain 1.3E-07 21 25.00 187 231
PPR PPR repeat 1.2E-10 31 25.00 188 217
PPR_long Pentacotripeptide-repeat region of PRORP 6.3E-07 18 27.00 189 274
TPR_14 Tetratricopeptide repeat 0.0053 7 23.50 190 221
ATP13 Mitochondrial ATPase expression 0.031 4 26.70 191 213
PPR_3 Pentatricopeptide repeat domain 0.014 5 25.00 261 300
PPR PPR repeat 0.00095 9 25.00 266 285
PPR_2 PPR repeat family 0.014 5 30.00 266 284
PPR_1 PPR repeat 0.015 4 23.80 267 284
ATP13 Mitochondrial ATPase expression 0.15 1 26.70 281 316
PPR_1 PPR repeat 1.2E-09 27 23.80 285 314
PPR_2 PPR repeat family 1E-14 44 30.00 286 334
PPR_long Pentacotripeptide-repeat region of PRORP 0.007 5 27.00 286 341
TPR_14 Tetratricopeptide repeat 0.05 4 23.50 290 318
BTAD Bacterial transcriptional activator domain 0.46 0 21.00 290 314
PPR PPR repeat 1.5E-12 37 25.00 290 318
PPR_3 Pentatricopeptide repeat domain 1.4E-05 15 25.00 310 349
PPR_1 PPR repeat 0.48 0 23.80 318 345
PPR PPR repeat 0.002 8 25.00 327 347
PPR_2 PPR repeat family 0.037 4 30.00 357 382
PPR PPR repeat 0.00022 11 25.00 362 385
PPR_1 PPR repeat 0.0058 6 23.80 362 382
PPR_1 PPR repeat 1.7E-05 14 23.80 385 416
PPR_3 Pentatricopeptide repeat domain 0.00058 9 25.00 387 434
PPR_2 PPR repeat family 3.1E-12 36 30.00 387 434
PPR PPR repeat 8.5E-09 25 25.00 390 420
TPR_14 Tetratricopeptide repeat 0.42 1 23.50 403 428
PPR_long Pentacotripeptide-repeat region of PRORP 6.1E-07 18 27.00 405 489
PPR_3 Pentatricopeptide repeat domain 6.2E-05 12 25.00 411 470
PPR_1 PPR repeat 0.074 2 23.80 419 450
PPR PPR repeat 0.00012 12 25.00 425 453
PPR_2 PPR repeat family 0.011 5 30.00 433 459
PPR_3 Pentatricopeptide repeat domain 0.053 3 25.00 450 501
PPR_1 PPR repeat 1.8E-05 14 23.80 461 485
PPR_2 PPR repeat family 0.017 5 30.00 462 485
PPR PPR repeat 0.00019 11 25.00 462 485
PPR_2 PPR repeat family 0.35 1 30.00 489 508
PPR PPR repeat 0.086 3 25.00 493 508
PPR_3 Pentatricopeptide repeat domain 0.08 3 25.00 528 556
PPR PPR repeat 0.011 6 25.00 531 556
DYW_deaminase DYW family of nucleic acid deaminases 0 130 31.60 561 684

694

PPR_3
PPR
PPR_3
PPR_2
PPR
PPR_1
BTAD
ATP13
PPR_1
PPR_3
PPR_1
PPR_2
PPR
BTAD
PPR_2
PPR_1
PPR_3
PPR
PPR_long
TPR_14
ATP13
PPR_3
PPR
PPR_2
PPR_1
ATP13
PPR_1
PPR_2
PPR_long
TPR_14
BTAD
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR
PPR_1
PPR_1
PPR_3
PPR_2
PPR
TPR_14
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR
DYW_deaminase

References:

DYW_deaminase

ATP13

PPR_long

TPR_14

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.0068	6	25.00	48	79
PPR	PPR repeat	0.34	1	25.00	59	79
PPR_3	Pentatricopeptide repeat domain	7.5E-05	12	25.00	82	130
PPR_2	PPR repeat family	1.3E-12	37	30.00	83	129
PPR	PPR repeat	6.1E-07	19	25.00	87	111
PPR_1	PPR repeat	0.0039	6	23.80	87	110
BTAD	Bacterial transcriptional activator domain	0.68	0	21.00	87	110
ATP13	Mitochondrial ATPase expression	0.015	5	26.70	88	110
PPR_1	PPR repeat	0.69	-1	23.80	115	126
PPR_3	Pentatricopeptide repeat domain	0.41	0	25.00	146	178
PPR_1	PPR repeat	0.41	0	23.80	149	178
PPR_2	PPR repeat family	0.11	2	30.00	153	178
PPR	PPR repeat	0.026	4	25.00	158	178
BTAD	Bacterial transcriptional activator domain	0.0048	7	21.00	181	215
PPR_2	PPR repeat family	6E-11	32	30.00	186	232
PPR_1	PPR repeat	2.9E-06	16	23.80	186	214
PPR_3	Pentatricopeptide repeat domain	1.3E-07	21	25.00	187	231
PPR	PPR repeat	1.2E-10	31	25.00	188	217
PPR_long	Pentacotripeptide-repeat region of PRORP	6.3E-07	18	27.00	189	274
TPR_14	Tetratricopeptide repeat	0.0053	7	23.50	190	221
ATP13	Mitochondrial ATPase expression	0.031	4	26.70	191	213
PPR_3	Pentatricopeptide repeat domain	0.014	5	25.00	261	300
PPR	PPR repeat	0.00095	9	25.00	266	285
PPR_2	PPR repeat family	0.014	5	30.00	266	284
PPR_1	PPR repeat	0.015	4	23.80	267	284
ATP13	Mitochondrial ATPase expression	0.15	1	26.70	281	316
PPR_1	PPR repeat	1.2E-09	27	23.80	285	314
PPR_2	PPR repeat family	1E-14	44	30.00	286	334
PPR_long	Pentacotripeptide-repeat region of PRORP	0.007	5	27.00	286	341
TPR_14	Tetratricopeptide repeat	0.05	4	23.50	290	318
BTAD	Bacterial transcriptional activator domain	0.46	0	21.00	290	314
PPR	PPR repeat	1.5E-12	37	25.00	290	318
PPR_3	Pentatricopeptide repeat domain	1.4E-05	15	25.00	310	349
PPR_1	PPR repeat	0.48	0	23.80	318	345
PPR	PPR repeat	0.002	8	25.00	327	347
PPR_2	PPR repeat family	0.037	4	30.00	357	382
PPR	PPR repeat	0.00022	11	25.00	362	385
PPR_1	PPR repeat	0.0058	6	23.80	362	382
PPR_1	PPR repeat	1.7E-05	14	23.80	385	416
PPR_3	Pentatricopeptide repeat domain	0.00058	9	25.00	387	434
PPR_2	PPR repeat family	3.1E-12	36	30.00	387	434
PPR	PPR repeat	8.5E-09	25	25.00	390	420
TPR_14	Tetratricopeptide repeat	0.42	1	23.50	403	428
PPR_long	Pentacotripeptide-repeat region of PRORP	6.1E-07	18	27.00	405	489
PPR_3	Pentatricopeptide repeat domain	6.2E-05	12	25.00	411	470
PPR_1	PPR repeat	0.074	2	23.80	419	450
PPR	PPR repeat	0.00012	12	25.00	425	453
PPR_2	PPR repeat family	0.011	5	30.00	433	459
PPR_3	Pentatricopeptide repeat domain	0.053	3	25.00	450	501
PPR_1	PPR repeat	1.8E-05	14	23.80	461	485
PPR_2	PPR repeat family	0.017	5	30.00	462	485
PPR	PPR repeat	0.00019	11	25.00	462	485
PPR_2	PPR repeat family	0.35	1	30.00	489	508
PPR	PPR repeat	0.086	3	25.00	493	508
PPR_3	Pentatricopeptide repeat domain	0.08	3	25.00	528	556
PPR	PPR repeat	0.011	6	25.00	531	556
DYW_deaminase	DYW family of nucleic acid deaminases	0	130	31.60	561	684