c2pfam

AT3G13150.1 :

Domain Description Evalue Bits GA Start End
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.51 -1 25.90 52 79
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.045 5 26.10 63 123
Mic1 Colon cancer-associated protein Mic1-like 0.016 5 20.80 72 113
RNase_3_N Ribonuclease III N-terminal domain 0.0018 9 26.80 91 124
Radical_SAM Radical SAM superfamily 0.00012 13 29.30 102 242
Coatomer_E Coatomer epsilon subunit 5.9E-05 13 20.40 106 200
Uteroglobin Uteroglobin family 0.00044 11 24.80 128 187
Y1_Tnp Transposase IS200 like 0.00016 12 22.20 131 181
PPR PPR repeat 8.2E-05 13 25.00 131 153
PPR_long Pentacotripeptide-repeat region of PRORP 0.00065 9 27.00 131 178
PPR_2 PPR repeat family 0.00012 13 30.00 132 160
PPR_1 PPR repeat 0.034 4 23.80 136 148
PPR_long Pentacotripeptide-repeat region of PRORP 5.2E-07 19 27.00 139 235
PPR_3 Pentatricopeptide repeat domain 6.8E-14 42 25.00 143 202
PPR_1 PPR repeat 0.00018 12 23.80 152 182
PPR_2 PPR repeat family 1.4E-16 51 30.00 156 205
TPR_8 Tetratricopeptide repeat 0.00064 10 25.70 158 182
PPR PPR repeat 1.5E-07 22 25.00 159 185
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.013 5 25.90 161 219
TPR_14 Tetratricopeptide repeat 0.052 5 23.50 162 184
RNase_3_N Ribonuclease III N-terminal domain 0.065 4 26.80 166 209
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.79 0 29.50 171 192
Glyco_trans_4_3 Glycosyl transferase family 4 group 0.93 -1 25.00 175 195
PPR_3 Pentatricopeptide repeat domain 1.1E-13 41 25.00 186 236
PPR_1 PPR repeat 2.2E-12 37 23.80 188 218
PPR_2 PPR repeat family 2.2E-16 50 30.00 191 238
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.0007 10 26.10 193 243
PPR PPR repeat 1.4E-11 34 25.00 194 224
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.012 5 25.90 195 249
Glyco_trans_4_3 Glycosyl transferase family 4 group 0.029 4 25.00 211 229
DUF1884 Domain of unknown function (DUF1884) 0.001 10 28.60 212 243
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.084 3 29.50 215 227
PPR_1 PPR repeat 0.0014 9 23.80 222 236
PPR_2 PPR repeat family 7.4E-10 29 30.00 226 273
PPR PPR repeat 0.002 9 25.00 229 258
PPR_long Pentacotripeptide-repeat region of PRORP 8.9E-08 22 27.00 245 317
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.021 4 25.90 248 320
PPR_3 Pentatricopeptide repeat domain 1.1E-12 38 25.00 250 308
PPR_1 PPR repeat 6.7E-05 13 23.80 257 290
RNase_3_N Ribonuclease III N-terminal domain 0.53 1 26.80 259 272
PPR_2 PPR repeat family 3.4E-13 40 30.00 261 308
PPR PPR repeat 4.9E-06 17 25.00 265 294
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.0021 9 26.10 273 344
PPR_3 Pentatricopeptide repeat domain 1.4E-15 48 25.00 285 342
Radical_SAM Radical SAM superfamily 0.03 5 29.30 291 341
Glyco_trans_4_3 Glycosyl transferase family 4 group 0.061 3 25.00 292 334
PPR_1 PPR repeat 3.1E-06 17 23.80 293 324
PPR_2 PPR repeat family 1.1E-18 58 30.00 296 345
PPR PPR repeat 5.8E-10 29 25.00 300 329
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.012 6 29.50 312 333
PPR_long Pentacotripeptide-repeat region of PRORP 1.4E-07 21 27.00 313 389
DUF1884 Domain of unknown function (DUF1884) 0.11 3 28.60 314 334
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.00035 10 25.90 317 369
PPR_3 Pentatricopeptide repeat domain 1.4E-06 19 25.00 322 362
PPR_1 PPR repeat 1.1E-11 35 23.80 327 358
PPR PPR repeat 0.0017 9 25.00 334 355
Uteroglobin Uteroglobin family 0.13 3 24.80 338 393
PPR_2 PPR repeat family 0.038 5 30.00 339 364
TPR_8 Tetratricopeptide repeat 0.051 4 25.70 345 361
TPR_14 Tetratricopeptide repeat 0.5 2 23.50 346 362
Mic1 Colon cancer-associated protein Mic1-like 0.15 2 20.80 364 397
PPR_1 PPR repeat 0.076 3 23.80 381 392

551

MRP-S27
RPM2
Mic1
RNase_3_N
Radical_SAM
Coatomer_E
Uteroglobin
Y1_Tnp
PPR
PPR_long
PPR_2
PPR_1
PPR_long
PPR_3
PPR_1
PPR_2
TPR_8
PPR
MRP-S27
TPR_14
RNase_3_N
Exog_C
Glyco_trans_4_3
PPR_3
PPR_1
PPR_2
RPM2
PPR
MRP-S27
Glyco_trans_4_3
DUF1884
Exog_C
PPR_1
PPR_2
PPR
PPR_long
MRP-S27
PPR_3
PPR_1
RNase_3_N
PPR_2
PPR
RPM2
PPR_3
Radical_SAM
Glyco_trans_4_3
PPR_1
PPR_2
PPR
Exog_C
PPR_long
DUF1884
MRP-S27
PPR_3
PPR_1
PPR
Uteroglobin
PPR_2
TPR_8
TPR_14
Mic1
PPR_1

References:

Glyco_trans_4_3

RNase_3_N

TPR_14

Mic1

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

Radical_SAM
11222759 Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods. Nucleic Acids Res 2001;29:1097-1106.
17335281 Anaerobic sulfatase-maturating enzymes: radical SAM enzymes able to catalyze in vitro sulfatase post-translational modification. J Am Chem Soc. 2007;129:3462-3463.
16766528 A new type of bacterial sulfatase reveals a novel maturation pathway in prokaryotes. J Biol Chem. 2006;281:22464-22470.

Coatomer_E
10469566 Segregation of COPI-rich and anterograde-cargo-rich domains in endoplasmic-reticulum-to-Golgi transport complexes. Curr Biol 1999;9:821-824.

Uteroglobin
7770456 Progesterone binding to uteroglobin: two alternative orientations of the ligand. Protein Eng 1995;8:71-79.

Exog_C

DUF1884

Y1_Tnp

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.51	-1	25.90	52	79
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.045	5	26.10	63	123
Mic1	Colon cancer-associated protein Mic1-like	0.016	5	20.80	72	113
RNase_3_N	Ribonuclease III N-terminal domain	0.0018	9	26.80	91	124
Radical_SAM	Radical SAM superfamily	0.00012	13	29.30	102	242
Coatomer_E	Coatomer epsilon subunit	5.9E-05	13	20.40	106	200
Uteroglobin	Uteroglobin family	0.00044	11	24.80	128	187
Y1_Tnp	Transposase IS200 like	0.00016	12	22.20	131	181
PPR	PPR repeat	8.2E-05	13	25.00	131	153
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00065	9	27.00	131	178
PPR_2	PPR repeat family	0.00012	13	30.00	132	160
PPR_1	PPR repeat	0.034	4	23.80	136	148
PPR_long	Pentacotripeptide-repeat region of PRORP	5.2E-07	19	27.00	139	235
PPR_3	Pentatricopeptide repeat domain	6.8E-14	42	25.00	143	202
PPR_1	PPR repeat	0.00018	12	23.80	152	182
PPR_2	PPR repeat family	1.4E-16	51	30.00	156	205
TPR_8	Tetratricopeptide repeat	0.00064	10	25.70	158	182
PPR	PPR repeat	1.5E-07	22	25.00	159	185
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.013	5	25.90	161	219
TPR_14	Tetratricopeptide repeat	0.052	5	23.50	162	184
RNase_3_N	Ribonuclease III N-terminal domain	0.065	4	26.80	166	209
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.79	0	29.50	171	192
Glyco_trans_4_3	Glycosyl transferase family 4 group	0.93	-1	25.00	175	195
PPR_3	Pentatricopeptide repeat domain	1.1E-13	41	25.00	186	236
PPR_1	PPR repeat	2.2E-12	37	23.80	188	218
PPR_2	PPR repeat family	2.2E-16	50	30.00	191	238
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.0007	10	26.10	193	243
PPR	PPR repeat	1.4E-11	34	25.00	194	224
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.012	5	25.90	195	249
Glyco_trans_4_3	Glycosyl transferase family 4 group	0.029	4	25.00	211	229
DUF1884	Domain of unknown function (DUF1884)	0.001	10	28.60	212	243
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.084	3	29.50	215	227
PPR_1	PPR repeat	0.0014	9	23.80	222	236
PPR_2	PPR repeat family	7.4E-10	29	30.00	226	273
PPR	PPR repeat	0.002	9	25.00	229	258
PPR_long	Pentacotripeptide-repeat region of PRORP	8.9E-08	22	27.00	245	317
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.021	4	25.90	248	320
PPR_3	Pentatricopeptide repeat domain	1.1E-12	38	25.00	250	308
PPR_1	PPR repeat	6.7E-05	13	23.80	257	290
RNase_3_N	Ribonuclease III N-terminal domain	0.53	1	26.80	259	272
PPR_2	PPR repeat family	3.4E-13	40	30.00	261	308
PPR	PPR repeat	4.9E-06	17	25.00	265	294
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.0021	9	26.10	273	344
PPR_3	Pentatricopeptide repeat domain	1.4E-15	48	25.00	285	342
Radical_SAM	Radical SAM superfamily	0.03	5	29.30	291	341
Glyco_trans_4_3	Glycosyl transferase family 4 group	0.061	3	25.00	292	334
PPR_1	PPR repeat	3.1E-06	17	23.80	293	324
PPR_2	PPR repeat family	1.1E-18	58	30.00	296	345
PPR	PPR repeat	5.8E-10	29	25.00	300	329
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.012	6	29.50	312	333
PPR_long	Pentacotripeptide-repeat region of PRORP	1.4E-07	21	27.00	313	389
DUF1884	Domain of unknown function (DUF1884)	0.11	3	28.60	314	334
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.00035	10	25.90	317	369
PPR_3	Pentatricopeptide repeat domain	1.4E-06	19	25.00	322	362
PPR_1	PPR repeat	1.1E-11	35	23.80	327	358
PPR	PPR repeat	0.0017	9	25.00	334	355
Uteroglobin	Uteroglobin family	0.13	3	24.80	338	393
PPR_2	PPR repeat family	0.038	5	30.00	339	364
TPR_8	Tetratricopeptide repeat	0.051	4	25.70	345	361
TPR_14	Tetratricopeptide repeat	0.5	2	23.50	346	362
Mic1	Colon cancer-associated protein Mic1-like	0.15	2	20.80	364	397
PPR_1	PPR repeat	0.076	3	23.80	381	392