c2pfam

AT3G13160.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.62 0 25.00 61 96
ATP13 Mitochondrial ATPase expression 1 -1 26.70 99 132
PPR_3 Pentatricopeptide repeat domain 1.8E-08 24 25.00 112 153
PPR_1 PPR repeat 4E-05 13 23.80 112 132
PPR_2 PPR repeat family 1.3E-10 31 30.00 112 152
PPR PPR repeat 6.3E-08 22 25.00 112 137
PPR_long Pentacotripeptide-repeat region of PRORP 1.8E-09 27 27.00 123 247
PPR_3 Pentatricopeptide repeat domain 1.9E-10 30 25.00 127 189
PPR_1 PPR repeat 0.15 1 23.80 135 150
PPR PPR repeat 1.5E-05 15 25.00 143 167
ATP13 Mitochondrial ATPase expression 0.012 5 26.70 172 206
PPR_1 PPR repeat 1.2E-11 34 23.80 173 203
PPR_2 PPR repeat family 4.1E-17 52 30.00 175 220
PPR PPR repeat 1.2E-08 24 25.00 179 208
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0028 6 25.90 182 242
PPR_3 Pentatricopeptide repeat domain 6.1E-10 29 25.00 199 252
PPR_1 PPR repeat 5.5E-06 15 23.80 206 222
PPR PPR repeat 0.00013 12 25.00 213 243
PPR_2 PPR repeat family 4.7E-06 16 30.00 216 254
Prp18 Prp18 domain 7.4E-05 12 21.10 234 305
PPR_1 PPR repeat 0.97 -1 23.80 241 251
PPR_2 PPR repeat family 3.7E-13 39 30.00 246 293
PPR PPR repeat 0.00013 12 25.00 249 276
PPR_long Pentacotripeptide-repeat region of PRORP 6.6E-09 25 27.00 263 366
ATP13 Mitochondrial ATPase expression 0.0052 6 26.70 263 308
PPR_3 Pentatricopeptide repeat domain 2.8E-12 36 25.00 268 327
PPR_1 PPR repeat 5.3E-10 28 23.80 277 302
PPR_2 PPR repeat family 1.8E-11 34 30.00 280 315
PPR PPR repeat 1.3E-10 30 25.00 283 313
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.015 3 25.90 284 346
TPR_11 TPR repeat 8.3E-05 12 26.80 292 307
PPR_1 PPR repeat 1.5E-07 20 23.80 311 342
ATP13 Mitochondrial ATPase expression 0.74 -1 26.70 314 345
PPR_2 PPR repeat family 6.4E-05 13 30.00 318 351
PPR PPR repeat 0.00015 11 25.00 319 343

394

PPR_3
ATP13
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
ATP13
PPR_1
PPR_2
PPR
MRP-S27
PPR_3
PPR_1
PPR
PPR_2
Prp18
PPR_1
PPR_2
PPR
PPR_long
ATP13
PPR_3
PPR_1
PPR_2
PPR
MRP-S27
TPR_11
PPR_1
ATP13
PPR_2
PPR

References:

Prp18
10737784 Crystal structure of the functional domain of the splicing factor Prp18. Proc Natl Acad Sci U S A 2000;97:3022-3027.

TPR_11

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

ATP13

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.62	0	25.00	61	96
ATP13	Mitochondrial ATPase expression	1	-1	26.70	99	132
PPR_3	Pentatricopeptide repeat domain	1.8E-08	24	25.00	112	153
PPR_1	PPR repeat	4E-05	13	23.80	112	132
PPR_2	PPR repeat family	1.3E-10	31	30.00	112	152
PPR	PPR repeat	6.3E-08	22	25.00	112	137
PPR_long	Pentacotripeptide-repeat region of PRORP	1.8E-09	27	27.00	123	247
PPR_3	Pentatricopeptide repeat domain	1.9E-10	30	25.00	127	189
PPR_1	PPR repeat	0.15	1	23.80	135	150
PPR	PPR repeat	1.5E-05	15	25.00	143	167
ATP13	Mitochondrial ATPase expression	0.012	5	26.70	172	206
PPR_1	PPR repeat	1.2E-11	34	23.80	173	203
PPR_2	PPR repeat family	4.1E-17	52	30.00	175	220
PPR	PPR repeat	1.2E-08	24	25.00	179	208
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0028	6	25.90	182	242
PPR_3	Pentatricopeptide repeat domain	6.1E-10	29	25.00	199	252
PPR_1	PPR repeat	5.5E-06	15	23.80	206	222
PPR	PPR repeat	0.00013	12	25.00	213	243
PPR_2	PPR repeat family	4.7E-06	16	30.00	216	254
Prp18	Prp18 domain	7.4E-05	12	21.10	234	305
PPR_1	PPR repeat	0.97	-1	23.80	241	251
PPR_2	PPR repeat family	3.7E-13	39	30.00	246	293
PPR	PPR repeat	0.00013	12	25.00	249	276
PPR_long	Pentacotripeptide-repeat region of PRORP	6.6E-09	25	27.00	263	366
ATP13	Mitochondrial ATPase expression	0.0052	6	26.70	263	308
PPR_3	Pentatricopeptide repeat domain	2.8E-12	36	25.00	268	327
PPR_1	PPR repeat	5.3E-10	28	23.80	277	302
PPR_2	PPR repeat family	1.8E-11	34	30.00	280	315
PPR	PPR repeat	1.3E-10	30	25.00	283	313
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.015	3	25.90	284	346
TPR_11	TPR repeat	8.3E-05	12	26.80	292	307
PPR_1	PPR repeat	1.5E-07	20	23.80	311	342
ATP13	Mitochondrial ATPase expression	0.74	-1	26.70	314	345
PPR_2	PPR repeat family	6.4E-05	13	30.00	318	351
PPR	PPR repeat	0.00015	11	25.00	319	343