c2pfam

AT3G13220.1 :

Domain Description Evalue Bits GA Start End
SMC_N RecF/RecN/SMC N terminal domain 0.00028 11 40.00 71 298
RsgA_GTPase RsgA GTPase 7.2E-05 13 30.00 93 142
ABC_tran ABC transporter 1.9E-29 93 23.10 107 257
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00045 10 26.60 110 141
AAA_16 AAA ATPase domain 6.9E-08 23 32.60 114 164
ATPase_2 ATPase domain predominantly from Archaea 0.00022 11 33.20 114 146
Rad17 Rad17 cell cycle checkpoint protein 9E-05 13 19.70 117 148
AAA_29 P-loop containing region of AAA domain 8.8E-05 13 27.00 118 134
AAA_22 AAA domain 2.5E-05 15 27.00 118 141
IstB_IS21 IstB-like ATP binding protein 0.031 4 24.10 119 138
AAA_24 AAA domain 0.00024 11 27.00 120 138
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 7E-05 13 27.00 120 157
AAA_18 AAA domain 0.00041 11 29.40 121 154
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00025 11 27.00 241 284
IstB_IS21 IstB-like ATP binding protein 0.017 5 24.10 241 284
ABC2_membrane_7 ABC-2 type transporter 5.6E-11 32 22.70 286 347
ABC2_membrane ABC-2 type transporter 0 130 25.50 415 623
DUF2339 Predicted membrane protein (DUF2339) 7.6E-06 15 29.50 433 573
ABC2_membrane_3 ABC-2 family transporter protein 2.8E-07 20 31.60 466 668
ABC2_membrane_7 ABC-2 type transporter 0.0035 6 22.70 477 615

685

SMC_N
RsgA_GTPase
ABC_tran
TsaE
AAA_16
ATPase_2
Rad17
AAA_29
AAA_22
IstB_IS21
AAA_24
AAA_21
AAA_18
AAA_21
IstB_IS21
ABC2_membrane_7
ABC2_membrane
DUF2339
ABC2_membrane_3
ABC2_membrane_7

References:

IstB_IS21

AAA_16

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

TsaE

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

ABC2_membrane
1303751 A new subfamily of bacterial ABC-type transport systems catalyzing export of drugs and carbohydrates. Protein Sci 1992;1:1326-1332.

DUF2339

ATPase_2

ABC2_membrane_7

AAA_29

ABC2_membrane_3

AAA_24

AAA_22

AAA_21

RsgA_GTPase

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
SMC_N	RecF/RecN/SMC N terminal domain	0.00028	11	40.00	71	298
RsgA_GTPase	RsgA GTPase	7.2E-05	13	30.00	93	142
ABC_tran	ABC transporter	1.9E-29	93	23.10	107	257
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00045	10	26.60	110	141
AAA_16	AAA ATPase domain	6.9E-08	23	32.60	114	164
ATPase_2	ATPase domain predominantly from Archaea	0.00022	11	33.20	114	146
Rad17	Rad17 cell cycle checkpoint protein	9E-05	13	19.70	117	148
AAA_29	P-loop containing region of AAA domain	8.8E-05	13	27.00	118	134
AAA_22	AAA domain	2.5E-05	15	27.00	118	141
IstB_IS21	IstB-like ATP binding protein	0.031	4	24.10	119	138
AAA_24	AAA domain	0.00024	11	27.00	120	138
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	7E-05	13	27.00	120	157
AAA_18	AAA domain	0.00041	11	29.40	121	154
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00025	11	27.00	241	284
IstB_IS21	IstB-like ATP binding protein	0.017	5	24.10	241	284
ABC2_membrane_7	ABC-2 type transporter	5.6E-11	32	22.70	286	347
ABC2_membrane	ABC-2 type transporter	0	130	25.50	415	623
DUF2339	Predicted membrane protein (DUF2339)	7.6E-06	15	29.50	433	573
ABC2_membrane_3	ABC-2 family transporter protein	2.8E-07	20	31.60	466	668
ABC2_membrane_7	ABC-2 type transporter	0.0035	6	22.70	477	615