c2pfam

AT3G13880.1 :

Domain Description Evalue Bits GA Start End
AEP1 ATPase expression protein 1 0.00066 9 27.00 73 124
ATP13 Mitochondrial ATPase expression 0.35 1 26.70 75 107
PPR_3 Pentatricopeptide repeat domain 0.14 2 25.00 82 112
PPR_2 PPR repeat family 2.3E-05 15 30.00 84 113
Exo84_C Exocyst component 84 C-terminal 0.00027 11 32.00 84 142
PPR PPR repeat 1E-06 19 25.00 86 113
PPR_1 PPR repeat 0.00028 11 23.80 86 108
PPR_1 PPR repeat 2.5E-06 17 23.80 111 136
PPR_3 Pentatricopeptide repeat domain 5.3E-05 13 25.00 112 161
PPR_2 PPR repeat family 7.5E-10 29 30.00 112 158
PPR PPR repeat 7.1E-09 26 25.00 114 143
TPR_12 Tetratricopeptide repeat 0.0074 7 30.10 117 143
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.0025 8 28.10 119 137
TPR_14 Tetratricopeptide repeat 0.28 3 23.50 119 143
TPR_2 Tetratricopeptide repeat 0.028 5 22.40 123 143
TPR_8 Tetratricopeptide repeat 0.3 2 25.70 123 139
PPR_long Pentacotripeptide-repeat region of PRORP 0.88 -1 27.00 130 159
RNPP_C RNPP family C-terminal domain 0.026 4 26.50 160 208
PPR_3 Pentatricopeptide repeat domain 0.37 1 25.00 178 209
PPR_2 PPR repeat family 1.4E-05 15 30.00 183 207
PPR PPR repeat 3.8E-07 20 25.00 187 211
PPR_1 PPR repeat 1.7E-05 15 23.80 187 207
ATP13 Mitochondrial ATPase expression 0.96 -1 26.70 189 208
PPR_long Pentacotripeptide-repeat region of PRORP 0.99 -1 27.00 189 216
TPR_14 Tetratricopeptide repeat 0.22 3 23.50 190 212
TPR_8 Tetratricopeptide repeat 0.01 6 25.70 192 213
PPR_1 PPR repeat 0.0012 9 23.80 212 240
PPR_3 Pentatricopeptide repeat domain 0.0049 7 25.00 213 259
PPR_2 PPR repeat family 3.4E-10 30 30.00 213 260
PPR PPR repeat 2.2E-08 24 25.00 215 245
PPR_long Pentacotripeptide-repeat region of PRORP 0.57 -1 27.00 221 259
PPR_long Pentacotripeptide-repeat region of PRORP 0.92 -1 27.00 230 260
AEP1 ATPase expression protein 1 0.00024 10 27.00 280 331
PPR_3 Pentatricopeptide repeat domain 3.4E-07 20 25.00 281 326
PPR_1 PPR repeat 1.1E-05 15 23.80 283 313
RNPP_C RNPP family C-terminal domain 0.0094 5 26.50 283 311
PPR_2 PPR repeat family 1.3E-06 19 30.00 286 318
PPR PPR repeat 5.8E-08 23 25.00 291 318
TPR_14 Tetratricopeptide repeat 0.14 3 23.50 291 311
TPR_8 Tetratricopeptide repeat 0.18 3 25.70 292 310
DUF4817 Helix-turn-helix domain (DUF4817) 0.84 0 22.60 294 310
TPR_2 Tetratricopeptide repeat 0.25 2 22.40 296 310
PPR_long Pentacotripeptide-repeat region of PRORP 2.3E-07 20 27.00 297 410
PPR_2 PPR repeat family 6.3E-22 68 30.00 316 368
PPR_1 PPR repeat 6.8E-05 13 23.80 317 328
PPR_3 Pentatricopeptide repeat domain 3.7E-07 20 25.00 317 368
PPR PPR repeat 4.6E-05 14 25.00 319 354
PPR_1 PPR repeat 0.93 -1 23.80 341 349
PPR PPR repeat 0.52 1 25.00 397 416
PPR_3 Pentatricopeptide repeat domain 0.0048 7 25.00 421 470
PPR_1 PPR repeat 0.0023 8 23.80 423 449
PPR_2 PPR repeat family 6.9E-12 36 30.00 423 470
PPR_long Pentacotripeptide-repeat region of PRORP 0.023 4 27.00 425 459
PPR PPR repeat 1.6E-07 22 25.00 426 451
TPR_14 Tetratricopeptide repeat 0.18 3 23.50 428 461
DUF4817 Helix-turn-helix domain (DUF4817) 0.0012 9 22.60 430 463
PPR PPR repeat 0.016 6 25.00 501 520
PPR_2 PPR repeat family 0.44 1 30.00 501 519
PPR_3 Pentatricopeptide repeat domain 0.27 2 25.00 501 521
ATP13 Mitochondrial ATPase expression 0.033 4 26.70 520 552
PPR_1 PPR repeat 7.3E-09 25 23.80 522 552
PPR_3 Pentatricopeptide repeat domain 7.1E-09 26 25.00 523 563
PPR_2 PPR repeat family 4.6E-13 39 30.00 523 572
PPR_long Pentacotripeptide-repeat region of PRORP 7.9E-08 22 27.00 526 619
PPR PPR repeat 1.1E-09 28 25.00 527 556
ATP13 Mitochondrial ATPase expression 0.2 2 26.70 556 599
PPR PPR repeat 0.0048 7 25.00 566 588
PPR_2 PPR repeat family 0.0074 7 30.00 569 605
PPR_1 PPR repeat 0.0004 10 23.80 592 618
PPR PPR repeat 0.0083 7 25.00 599 619
PPR PPR repeat 0.13 3 25.00 664 693

748

AEP1
ATP13
PPR_3
PPR_2
Exo84_C
PPR
PPR_1
PPR_1
PPR_3
PPR_2
PPR
TPR_12
SPOB_a
TPR_14
TPR_2
TPR_8
PPR_long
RNPP_C
PPR_3
PPR_2
PPR
PPR_1
ATP13
PPR_long
TPR_14
TPR_8
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_long
AEP1
PPR_3
PPR_1
RNPP_C
PPR_2
PPR
TPR_14
TPR_8
DUF4817
TPR_2
PPR_long
PPR_2
PPR_1
PPR_3
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR_long
PPR
TPR_14
DUF4817
PPR
PPR_2
PPR_3
ATP13
PPR_1
PPR_3
PPR_2
PPR_long
PPR
ATP13
PPR
PPR_2
PPR_1
PPR
PPR

References:

AEP1

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

Exo84_C

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

DUF4817

ATP13

RNPP_C

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPOB_a

TPR_12

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
AEP1	ATPase expression protein 1	0.00066	9	27.00	73	124
ATP13	Mitochondrial ATPase expression	0.35	1	26.70	75	107
PPR_3	Pentatricopeptide repeat domain	0.14	2	25.00	82	112
PPR_2	PPR repeat family	2.3E-05	15	30.00	84	113
Exo84_C	Exocyst component 84 C-terminal	0.00027	11	32.00	84	142
PPR	PPR repeat	1E-06	19	25.00	86	113
PPR_1	PPR repeat	0.00028	11	23.80	86	108
PPR_1	PPR repeat	2.5E-06	17	23.80	111	136
PPR_3	Pentatricopeptide repeat domain	5.3E-05	13	25.00	112	161
PPR_2	PPR repeat family	7.5E-10	29	30.00	112	158
PPR	PPR repeat	7.1E-09	26	25.00	114	143
TPR_12	Tetratricopeptide repeat	0.0074	7	30.10	117	143
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.0025	8	28.10	119	137
TPR_14	Tetratricopeptide repeat	0.28	3	23.50	119	143
TPR_2	Tetratricopeptide repeat	0.028	5	22.40	123	143
TPR_8	Tetratricopeptide repeat	0.3	2	25.70	123	139
PPR_long	Pentacotripeptide-repeat region of PRORP	0.88	-1	27.00	130	159
RNPP_C	RNPP family C-terminal domain	0.026	4	26.50	160	208
PPR_3	Pentatricopeptide repeat domain	0.37	1	25.00	178	209
PPR_2	PPR repeat family	1.4E-05	15	30.00	183	207
PPR	PPR repeat	3.8E-07	20	25.00	187	211
PPR_1	PPR repeat	1.7E-05	15	23.80	187	207
ATP13	Mitochondrial ATPase expression	0.96	-1	26.70	189	208
PPR_long	Pentacotripeptide-repeat region of PRORP	0.99	-1	27.00	189	216
TPR_14	Tetratricopeptide repeat	0.22	3	23.50	190	212
TPR_8	Tetratricopeptide repeat	0.01	6	25.70	192	213
PPR_1	PPR repeat	0.0012	9	23.80	212	240
PPR_3	Pentatricopeptide repeat domain	0.0049	7	25.00	213	259
PPR_2	PPR repeat family	3.4E-10	30	30.00	213	260
PPR	PPR repeat	2.2E-08	24	25.00	215	245
PPR_long	Pentacotripeptide-repeat region of PRORP	0.57	-1	27.00	221	259
PPR_long	Pentacotripeptide-repeat region of PRORP	0.92	-1	27.00	230	260
AEP1	ATPase expression protein 1	0.00024	10	27.00	280	331
PPR_3	Pentatricopeptide repeat domain	3.4E-07	20	25.00	281	326
PPR_1	PPR repeat	1.1E-05	15	23.80	283	313
RNPP_C	RNPP family C-terminal domain	0.0094	5	26.50	283	311
PPR_2	PPR repeat family	1.3E-06	19	30.00	286	318
PPR	PPR repeat	5.8E-08	23	25.00	291	318
TPR_14	Tetratricopeptide repeat	0.14	3	23.50	291	311
TPR_8	Tetratricopeptide repeat	0.18	3	25.70	292	310
DUF4817	Helix-turn-helix domain (DUF4817)	0.84	0	22.60	294	310
TPR_2	Tetratricopeptide repeat	0.25	2	22.40	296	310
PPR_long	Pentacotripeptide-repeat region of PRORP	2.3E-07	20	27.00	297	410
PPR_2	PPR repeat family	6.3E-22	68	30.00	316	368
PPR_1	PPR repeat	6.8E-05	13	23.80	317	328
PPR_3	Pentatricopeptide repeat domain	3.7E-07	20	25.00	317	368
PPR	PPR repeat	4.6E-05	14	25.00	319	354
PPR_1	PPR repeat	0.93	-1	23.80	341	349
PPR	PPR repeat	0.52	1	25.00	397	416
PPR_3	Pentatricopeptide repeat domain	0.0048	7	25.00	421	470
PPR_1	PPR repeat	0.0023	8	23.80	423	449
PPR_2	PPR repeat family	6.9E-12	36	30.00	423	470
PPR_long	Pentacotripeptide-repeat region of PRORP	0.023	4	27.00	425	459
PPR	PPR repeat	1.6E-07	22	25.00	426	451
TPR_14	Tetratricopeptide repeat	0.18	3	23.50	428	461
DUF4817	Helix-turn-helix domain (DUF4817)	0.0012	9	22.60	430	463
PPR	PPR repeat	0.016	6	25.00	501	520
PPR_2	PPR repeat family	0.44	1	30.00	501	519
PPR_3	Pentatricopeptide repeat domain	0.27	2	25.00	501	521
ATP13	Mitochondrial ATPase expression	0.033	4	26.70	520	552
PPR_1	PPR repeat	7.3E-09	25	23.80	522	552
PPR_3	Pentatricopeptide repeat domain	7.1E-09	26	25.00	523	563
PPR_2	PPR repeat family	4.6E-13	39	30.00	523	572
PPR_long	Pentacotripeptide-repeat region of PRORP	7.9E-08	22	27.00	526	619
PPR	PPR repeat	1.1E-09	28	25.00	527	556
ATP13	Mitochondrial ATPase expression	0.2	2	26.70	556	599
PPR	PPR repeat	0.0048	7	25.00	566	588
PPR_2	PPR repeat family	0.0074	7	30.00	569	605
PPR_1	PPR repeat	0.0004	10	23.80	592	618
PPR	PPR repeat	0.0083	7	25.00	599	619
PPR	PPR repeat	0.13	3	25.00	664	693