c2pfam

AT3G14730.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.082 2 25.00 59 86
PPR_long Pentacotripeptide-repeat region of PRORP 0.34 -1 27.00 64 88
PPR_1 PPR repeat 0.0069 5 23.80 100 119
PPR PPR repeat 0.00028 10 25.00 100 119
PPR_2 PPR repeat family 0.35 0 30.00 101 119
PPR_1 PPR repeat 5.5E-06 15 23.80 121 153
PPR_3 Pentatricopeptide repeat domain 3.5E-09 26 25.00 123 169
PPR_2 PPR repeat family 2.9E-14 42 30.00 124 170
PPR PPR repeat 3.6E-09 25 25.00 129 157
PPR_long Pentacotripeptide-repeat region of PRORP 0.11 0 27.00 145 169
PPR_1 PPR repeat 0.024 3 23.80 155 170
PPR PPR repeat 0.0019 7 25.00 201 223
PPR_1 PPR repeat 0.017 4 23.80 202 220
PPR_2 PPR repeat family 0.25 0 30.00 205 224
PPR_2 PPR repeat family 3.4E-10 29 30.00 226 272
PPR_1 PPR repeat 0.0003 9 23.80 226 254
PPR_3 Pentatricopeptide repeat domain 0.0039 6 25.00 228 271
PPR PPR repeat 3.4E-09 25 25.00 228 258
PPR_long Pentacotripeptide-repeat region of PRORP 0.0062 5 27.00 245 367
PPR PPR repeat 0.17 1 25.00 266 284
PPR_3 Pentatricopeptide repeat domain 0.0063 5 25.00 295 325
PPR_2 PPR repeat family 4.5E-06 16 30.00 296 327
PPR PPR repeat 7.7E-08 21 25.00 300 327
PPR_1 PPR repeat 0.0034 6 23.80 301 323
PPR_1 PPR repeat 0.61 -1 23.80 327 335
PPR_3 Pentatricopeptide repeat domain 5.1E-05 12 25.00 327 374
PPR_2 PPR repeat family 1.4E-08 24 30.00 327 373
PPR PPR repeat 0.0016 8 25.00 329 359
PPR_long Pentacotripeptide-repeat region of PRORP 0.046 2 27.00 343 430
PPR_1 PPR repeat 0.03 3 23.80 358 369
PPR_1 PPR repeat 7.4E-06 15 23.80 401 429
PPR_2 PPR repeat family 4.8E-06 16 30.00 401 429
PPR PPR repeat 2.9E-08 23 25.00 405 431
PPR_3 Pentatricopeptide repeat domain 0.0027 7 25.00 406 430
PPR_2 PPR repeat family 4.7E-13 38 30.00 431 479
PPR_1 PPR repeat 0.015 4 23.80 432 443
PPR PPR repeat 1.3E-08 24 25.00 435 464
PPR_long Pentacotripeptide-repeat region of PRORP 3.5E-05 12 27.00 452 525
PPR_3 Pentatricopeptide repeat domain 7.6E-05 12 25.00 459 515
PPR_1 PPR repeat 0.008 5 23.80 463 495
PPR PPR repeat 0.0062 6 25.00 470 495
PPR_1 PPR repeat 0.00011 11 23.80 500 526
PPR PPR repeat 0.0019 8 25.00 507 526
PPR_2 PPR repeat family 0.02 4 30.00 507 526
PPR PPR repeat 0.51 0 25.00 537 556
PPR_3 Pentatricopeptide repeat domain 0.89 -2 25.00 540 556
PPR PPR repeat 0.00014 11 25.00 573 600
PPR_2 PPR repeat family 0.0049 6 30.00 578 602
PPR_3 Pentatricopeptide repeat domain 0.038 3 25.00 578 602
PPR_long Pentacotripeptide-repeat region of PRORP 0.67 -2 27.00 579 603
DYW_deaminase DYW family of nucleic acid deaminases 1.8E-06 17 31.60 605 647

653

PPR_3
PPR_long
PPR_1
PPR
PPR_2
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR
PPR_1
PPR_2
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR
PPR_3
PPR_2
PPR
PPR_1
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR_1
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_1
PPR
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR_long
DYW_deaminase

References:

DYW_deaminase

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.082	2	25.00	59	86
PPR_long	Pentacotripeptide-repeat region of PRORP	0.34	-1	27.00	64	88
PPR_1	PPR repeat	0.0069	5	23.80	100	119
PPR	PPR repeat	0.00028	10	25.00	100	119
PPR_2	PPR repeat family	0.35	0	30.00	101	119
PPR_1	PPR repeat	5.5E-06	15	23.80	121	153
PPR_3	Pentatricopeptide repeat domain	3.5E-09	26	25.00	123	169
PPR_2	PPR repeat family	2.9E-14	42	30.00	124	170
PPR	PPR repeat	3.6E-09	25	25.00	129	157
PPR_long	Pentacotripeptide-repeat region of PRORP	0.11	0	27.00	145	169
PPR_1	PPR repeat	0.024	3	23.80	155	170
PPR	PPR repeat	0.0019	7	25.00	201	223
PPR_1	PPR repeat	0.017	4	23.80	202	220
PPR_2	PPR repeat family	0.25	0	30.00	205	224
PPR_2	PPR repeat family	3.4E-10	29	30.00	226	272
PPR_1	PPR repeat	0.0003	9	23.80	226	254
PPR_3	Pentatricopeptide repeat domain	0.0039	6	25.00	228	271
PPR	PPR repeat	3.4E-09	25	25.00	228	258
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0062	5	27.00	245	367
PPR	PPR repeat	0.17	1	25.00	266	284
PPR_3	Pentatricopeptide repeat domain	0.0063	5	25.00	295	325
PPR_2	PPR repeat family	4.5E-06	16	30.00	296	327
PPR	PPR repeat	7.7E-08	21	25.00	300	327
PPR_1	PPR repeat	0.0034	6	23.80	301	323
PPR_1	PPR repeat	0.61	-1	23.80	327	335
PPR_3	Pentatricopeptide repeat domain	5.1E-05	12	25.00	327	374
PPR_2	PPR repeat family	1.4E-08	24	30.00	327	373
PPR	PPR repeat	0.0016	8	25.00	329	359
PPR_long	Pentacotripeptide-repeat region of PRORP	0.046	2	27.00	343	430
PPR_1	PPR repeat	0.03	3	23.80	358	369
PPR_1	PPR repeat	7.4E-06	15	23.80	401	429
PPR_2	PPR repeat family	4.8E-06	16	30.00	401	429
PPR	PPR repeat	2.9E-08	23	25.00	405	431
PPR_3	Pentatricopeptide repeat domain	0.0027	7	25.00	406	430
PPR_2	PPR repeat family	4.7E-13	38	30.00	431	479
PPR_1	PPR repeat	0.015	4	23.80	432	443
PPR	PPR repeat	1.3E-08	24	25.00	435	464
PPR_long	Pentacotripeptide-repeat region of PRORP	3.5E-05	12	27.00	452	525
PPR_3	Pentatricopeptide repeat domain	7.6E-05	12	25.00	459	515
PPR_1	PPR repeat	0.008	5	23.80	463	495
PPR	PPR repeat	0.0062	6	25.00	470	495
PPR_1	PPR repeat	0.00011	11	23.80	500	526
PPR	PPR repeat	0.0019	8	25.00	507	526
PPR_2	PPR repeat family	0.02	4	30.00	507	526
PPR	PPR repeat	0.51	0	25.00	537	556
PPR_3	Pentatricopeptide repeat domain	0.89	-2	25.00	540	556
PPR	PPR repeat	0.00014	11	25.00	573	600
PPR_2	PPR repeat family	0.0049	6	30.00	578	602
PPR_3	Pentatricopeptide repeat domain	0.038	3	25.00	578	602
PPR_long	Pentacotripeptide-repeat region of PRORP	0.67	-2	27.00	579	603
DYW_deaminase	DYW family of nucleic acid deaminases	1.8E-06	17	31.60	605	647