c2pfam

AT3G15930.1 :

Domain Description Evalue Bits GA Start End
PPR_1 PPR repeat 0.0084 6 23.80 96 108
PPR_2 PPR repeat family 3.1E-12 36 30.00 97 144
PPR PPR repeat 7.1E-05 13 25.00 100 130
PPR_3 Pentatricopeptide repeat domain 0.1 2 25.00 120 142
PPR_1 PPR repeat 0.039 3 23.80 129 144
PPR_1 PPR repeat 0.51 0 23.80 174 194
PPR PPR repeat 0.00093 9 25.00 174 195
PPR_2 PPR repeat family 0.17 2 30.00 174 199
PPR_1 PPR repeat 8.1E-06 15 23.80 197 228
PPR_3 Pentatricopeptide repeat domain 0.00018 11 25.00 198 246
PPR_2 PPR repeat family 5.5E-11 32 30.00 200 247
PPR PPR repeat 1.5E-08 24 25.00 202 230
TPR_14 Tetratricopeptide repeat 0.31 2 23.50 204 243
TPR_12 Tetratricopeptide repeat 0.091 3 30.10 204 224
PPR_long Pentacotripeptide-repeat region of PRORP 1.6E-06 17 27.00 216 302
DED Death effector domain 0.00084 9 22.00 218 261
PPR_3 Pentatricopeptide repeat domain 0.00011 12 25.00 242 281
TPR_12 Tetratricopeptide repeat 0.89 0 30.10 273 295
PPR_3 Pentatricopeptide repeat domain 0.0026 8 25.00 275 299
PPR_1 PPR repeat 0.0001 12 23.80 275 298
PPR PPR repeat 1.4E-06 18 25.00 275 301
PPR_2 PPR repeat family 3.3E-05 14 30.00 275 301
TPR_14 Tetratricopeptide repeat 0.025 5 23.50 276 296
PPR_2 PPR repeat family 4.7E-05 13 30.00 300 330
PPR_1 PPR repeat 0.00034 10 23.80 301 328
PPR_3 Pentatricopeptide repeat domain 0.0013 9 25.00 301 328
PPR PPR repeat 4.3E-06 17 25.00 303 329
TPR_14 Tetratricopeptide repeat 0.3 2 23.50 305 328
PPR_2 PPR repeat family 1.2E-12 38 30.00 332 379
PPR_1 PPR repeat 6.2E-06 16 23.80 332 360
PPR PPR repeat 2.7E-11 33 25.00 334 363
PPR_long Pentacotripeptide-repeat region of PRORP 0.001 8 27.00 348 430
PPR_3 Pentatricopeptide repeat domain 2.5E-06 17 25.00 355 413
PPR_3 Pentatricopeptide repeat domain 0.00051 10 25.00 393 431
PPR_2 PPR repeat family 1.8E-08 24 30.00 402 432
PPR_1 PPR repeat 0.00011 12 23.80 403 429
PPR PPR repeat 2.5E-07 20 25.00 407 432
PPR_2 PPR repeat family 1.5E-12 37 30.00 433 479
PPR_1 PPR repeat 0.00041 10 23.80 433 460
PPR_3 Pentatricopeptide repeat domain 3.5E-05 14 25.00 433 479
PPR PPR repeat 2.6E-08 24 25.00 435 463
TPR_14 Tetratricopeptide repeat 0.74 1 23.50 437 457
TPR_19 Tetratricopeptide repeat 0.34 1 25.00 447 494
PPR_long Pentacotripeptide-repeat region of PRORP 8E-06 15 27.00 451 531
PPR_3 Pentatricopeptide repeat domain 5.2E-08 23 25.00 456 516
PPR_1 PPR repeat 0.00024 11 23.80 464 496
PPR PPR repeat 1.8E-05 15 25.00 470 498
TPR_14 Tetratricopeptide repeat 0.22 2 23.50 475 497
PPR_2 PPR repeat family 4.9E-05 13 30.00 476 515
PPR_1 PPR repeat 1.2E-09 27 23.80 501 531
PPR_2 PPR repeat family 0.0007 10 30.00 503 532
PPR PPR repeat 5.3E-07 19 25.00 506 532
TPR_14 Tetratricopeptide repeat 0.88 1 23.50 557 577
TPR_19 Tetratricopeptide repeat 0.0038 7 25.00 560 588
DUF3213 Protein of unknown function (DUF3213) 0.00062 10 20.30 589 643
DYW_deaminase DYW family of nucleic acid deaminases 6.2E-10 29 31.60 606 660
TPR_12 Tetratricopeptide repeat 0.006 7 30.10 626 665

687

PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_1
PPR
PPR_2
PPR_1
PPR_3
PPR_2
PPR
TPR_14
TPR_12
PPR_long
DED
PPR_3
TPR_12
PPR_3
PPR_1
PPR
PPR_2
TPR_14
PPR_2
PPR_1
PPR_3
PPR
TPR_14
PPR_2
PPR_1
PPR
PPR_long
PPR_3
PPR_3
PPR_2
PPR_1
PPR
PPR_2
PPR_1
PPR_3
PPR
TPR_14
TPR_19
PPR_long
PPR_3
PPR_1
PPR
TPR_14
PPR_2
PPR_1
PPR_2
PPR
TPR_14
TPR_19
DUF3213
DYW_deaminase
TPR_12

References:

DUF3213
16927360 Structure determination of a new protein from backbone-centered NMR data and NMR-assisted structure prediction. Proteins. 2006;65:480-489.

TPR_19

DYW_deaminase

DED
9582077 NMR structure and mutagenesis of the FADD (Mort1) death-effector domain. Nature 1998;392:941-945.

PPR_long

TPR_14

TPR_12

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_1	PPR repeat	0.0084	6	23.80	96	108
PPR_2	PPR repeat family	3.1E-12	36	30.00	97	144
PPR	PPR repeat	7.1E-05	13	25.00	100	130
PPR_3	Pentatricopeptide repeat domain	0.1	2	25.00	120	142
PPR_1	PPR repeat	0.039	3	23.80	129	144
PPR_1	PPR repeat	0.51	0	23.80	174	194
PPR	PPR repeat	0.00093	9	25.00	174	195
PPR_2	PPR repeat family	0.17	2	30.00	174	199
PPR_1	PPR repeat	8.1E-06	15	23.80	197	228
PPR_3	Pentatricopeptide repeat domain	0.00018	11	25.00	198	246
PPR_2	PPR repeat family	5.5E-11	32	30.00	200	247
PPR	PPR repeat	1.5E-08	24	25.00	202	230
TPR_14	Tetratricopeptide repeat	0.31	2	23.50	204	243
TPR_12	Tetratricopeptide repeat	0.091	3	30.10	204	224
PPR_long	Pentacotripeptide-repeat region of PRORP	1.6E-06	17	27.00	216	302
DED	Death effector domain	0.00084	9	22.00	218	261
PPR_3	Pentatricopeptide repeat domain	0.00011	12	25.00	242	281
TPR_12	Tetratricopeptide repeat	0.89	0	30.10	273	295
PPR_3	Pentatricopeptide repeat domain	0.0026	8	25.00	275	299
PPR_1	PPR repeat	0.0001	12	23.80	275	298
PPR	PPR repeat	1.4E-06	18	25.00	275	301
PPR_2	PPR repeat family	3.3E-05	14	30.00	275	301
TPR_14	Tetratricopeptide repeat	0.025	5	23.50	276	296
PPR_2	PPR repeat family	4.7E-05	13	30.00	300	330
PPR_1	PPR repeat	0.00034	10	23.80	301	328
PPR_3	Pentatricopeptide repeat domain	0.0013	9	25.00	301	328
PPR	PPR repeat	4.3E-06	17	25.00	303	329
TPR_14	Tetratricopeptide repeat	0.3	2	23.50	305	328
PPR_2	PPR repeat family	1.2E-12	38	30.00	332	379
PPR_1	PPR repeat	6.2E-06	16	23.80	332	360
PPR	PPR repeat	2.7E-11	33	25.00	334	363
PPR_long	Pentacotripeptide-repeat region of PRORP	0.001	8	27.00	348	430
PPR_3	Pentatricopeptide repeat domain	2.5E-06	17	25.00	355	413
PPR_3	Pentatricopeptide repeat domain	0.00051	10	25.00	393	431
PPR_2	PPR repeat family	1.8E-08	24	30.00	402	432
PPR_1	PPR repeat	0.00011	12	23.80	403	429
PPR	PPR repeat	2.5E-07	20	25.00	407	432
PPR_2	PPR repeat family	1.5E-12	37	30.00	433	479
PPR_1	PPR repeat	0.00041	10	23.80	433	460
PPR_3	Pentatricopeptide repeat domain	3.5E-05	14	25.00	433	479
PPR	PPR repeat	2.6E-08	24	25.00	435	463
TPR_14	Tetratricopeptide repeat	0.74	1	23.50	437	457
TPR_19	Tetratricopeptide repeat	0.34	1	25.00	447	494
PPR_long	Pentacotripeptide-repeat region of PRORP	8E-06	15	27.00	451	531
PPR_3	Pentatricopeptide repeat domain	5.2E-08	23	25.00	456	516
PPR_1	PPR repeat	0.00024	11	23.80	464	496
PPR	PPR repeat	1.8E-05	15	25.00	470	498
TPR_14	Tetratricopeptide repeat	0.22	2	23.50	475	497
PPR_2	PPR repeat family	4.9E-05	13	30.00	476	515
PPR_1	PPR repeat	1.2E-09	27	23.80	501	531
PPR_2	PPR repeat family	0.0007	10	30.00	503	532
PPR	PPR repeat	5.3E-07	19	25.00	506	532
TPR_14	Tetratricopeptide repeat	0.88	1	23.50	557	577
TPR_19	Tetratricopeptide repeat	0.0038	7	25.00	560	588
DUF3213	Protein of unknown function (DUF3213)	0.00062	10	20.30	589	643
DYW_deaminase	DYW family of nucleic acid deaminases	6.2E-10	29	31.60	606	660
TPR_12	Tetratricopeptide repeat	0.006	7	30.10	626	665