c2pfam

AT3G16340.1 :

Domain Description Evalue Bits GA Start End
ABC_trans_N ABC-transporter N-terminal 1.4E-13 43 25.40 76 138
RsgA_GTPase RsgA GTPase 0.0081 7 30.00 148 202
ABC_tran ABC transporter 8.2E-15 47 23.10 163 345
T2SSE Type II/IV secretion system protein 0.00055 10 24.90 163 200
ABC_ATPase Predicted ATPase of the ABC class 0.0015 9 19.30 164 200
DnaB_C DnaB-like helicase C terminal domain 0.012 6 20.60 166 199
AAA_25 AAA domain 0.00019 12 27.00 166 198
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.11 4 26.60 168 199
AAA_29 P-loop containing region of AAA domain 0.00028 12 27.00 171 193
AAA_30 AAA domain 0.027 5 27.00 172 200
Rad17 Rad17 cell cycle checkpoint protein 0.062 4 19.70 172 201
Ploopntkinase3 P-loop Nucleotide Kinase3 0.0092 7 27.00 173 201
AAA_22 AAA domain 0.0028 9 27.00 173 205
SMC_N RecF/RecN/SMC N terminal domain 0.06 4 40.00 173 363
AAA_16 AAA ATPase domain 0.00024 13 32.60 174 200
NACHT NACHT domain 0.046 5 20.40 174 199
AAA_14 AAA domain 0.022 6 27.00 174 198
AAA_23 AAA domain 0.021 7 27.00 174 193
cobW CobW/HypB/UreG, nucleotide-binding domain 0.015 6 20.70 175 198
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.064 4 20.50 175 196
AAA_24 AAA domain 0.024 6 27.00 175 193
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0083 7 27.00 175 194
AAA_33 AAA domain 0.0083 8 27.00 176 198
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.0012 10 20.00 176 205
MMR_HSR1 GTPase of unknown function 0.0099 7 24.50 177 197
AAA ATPase family associated with various cellular activities (AAA) 0.00045 12 20.80 177 200
AAA_18 AAA domain 0.01 8 29.40 177 200
AAA_28 AAA domain 0.00065 11 27.00 178 195
NTPase_1 NTPase 0.0018 9 23.90 178 209
MobB Molybdopterin guanine dinucleotide synthesis protein B 0.028 6 21.60 179 225
AAA_25 AAA domain 0.25 2 27.00 351 374
ABC2_membrane_7 ABC-2 type transporter 1.1E-08 26 22.70 378 430
ABC2_membrane ABC-2 type transporter 0 169 25.50 499 710
ABC2_membrane_3 ABC-2 family transporter protein 0.19 2 31.60 539 754
PDR_assoc Plant PDR ABC transporter associated 5.3E-29 91 22.70 716 780
PDR_CDR CDR ABC transporter 0.08 4 20.50 744 779
RsgA_GTPase RsgA GTPase 7.4E-05 14 30.00 835 875
DnaB_C DnaB-like helicase C terminal domain 0.15 3 20.60 839 874
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.013 7 26.60 840 873
ABC_tran ABC transporter 6.3E-22 70 23.10 842 994
ABC_ATPase Predicted ATPase of the ABC class 0.67 0 19.30 842 872
AAA_25 AAA domain 0.0012 10 27.00 845 873
SMC_N RecF/RecN/SMC N terminal domain 0.17 3 40.00 845 872
AAA_29 P-loop containing region of AAA domain 0.00014 13 27.00 852 872
AAA_16 AAA ATPase domain 0.0022 10 32.60 853 907
AAA_30 AAA domain 0.0033 8 27.00 853 873
Rad17 Rad17 cell cycle checkpoint protein 0.026 6 19.70 853 941
AAA_23 AAA domain 0.0037 9 27.00 854 873
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00053 11 27.00 854 921
AAA_33 AAA domain 0.0012 10 27.00 855 885
AAA_22 AAA domain 0.013 7 27.00 855 874
NACHT NACHT domain 0.014 7 20.40 855 879
cobW CobW/HypB/UreG, nucleotide-binding domain 0.018 6 20.70 855 873
Ploopntkinase3 P-loop Nucleotide Kinase3 0.29 2 27.00 856 873
MobB Molybdopterin guanine dinucleotide synthesis protein B 0.048 5 21.60 856 872
AAA_24 AAA domain 0.053 4 27.00 856 870
AAA_14 AAA domain 0.039 5 27.00 856 951
MMR_HSR1 GTPase of unknown function 0.024 6 24.50 856 876
AAA_28 AAA domain 0.027 6 27.00 856 876
AAA_18 AAA domain 0.0027 10 29.40 857 889
AAA ATPase family associated with various cellular activities (AAA) 0.022 6 20.80 857 991
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.43 2 20.00 857 874
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.029 5 20.50 857 875
SMC_N RecF/RecN/SMC N terminal domain 0.018 6 40.00 974 1028
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 7.6E-05 14 27.00 982 1027
NTPase_1 NTPase 0.35 2 23.90 1002 1030
ABC2_membrane_7 ABC-2 type transporter 1.2E-09 29 22.70 1023 1084
ABC2_membrane ABC-2 type transporter 0 193 25.50 1140 1353
ABC2_membrane_7 ABC-2 type transporter 0.75 0 22.70 1216 1263
ABC2_membrane_3 ABC-2 family transporter protein 0.00011 13 31.60 1217 1403
PDR_CDR CDR ABC transporter 0.016 6 20.50 1374 1412
PDR_assoc Plant PDR ABC transporter associated 0.054 5 22.70 1391 1412

1416

ABC_trans_N
RsgA_GTPase
ABC_tran
T2SSE
ABC_ATPase
DnaB_C
AAA_25
TsaE
AAA_29
AAA_30
Rad17
Ploopntkinase3
AAA_22
SMC_N
AAA_16
NACHT
AAA_14
AAA_23
cobW
PduV-EutP
AAA_24
AAA_21
AAA_33
RuvB_N
MMR_HSR1
AAA
AAA_18
AAA_28
NTPase_1
MobB
AAA_25
ABC2_membrane_7
ABC2_membrane
ABC2_membrane_3
PDR_assoc
PDR_CDR
RsgA_GTPase
DnaB_C
TsaE
ABC_tran
ABC_ATPase
AAA_25
SMC_N
AAA_29
AAA_16
AAA_30
Rad17
AAA_23
AAA_21
AAA_33
AAA_22
NACHT
cobW
Ploopntkinase3
MobB
AAA_24
AAA_14
MMR_HSR1
AAA_28
AAA_18
AAA
RuvB_N
PduV-EutP
SMC_N
AAA_21
NTPase_1
ABC2_membrane_7
ABC2_membrane
ABC2_membrane_7
ABC2_membrane_3
PDR_CDR
PDR_assoc

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

RsgA_GTPase

ABC2_membrane
1303751 A new subfamily of bacterial ABC-type transport systems catalyzing export of drugs and carbohydrates. Protein Sci 1992;1:1326-1332.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

ABC_trans_N

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

ABC2_membrane_7

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

TsaE

PDR_CDR
12709320 Functional Similarities and Differences between Candida albicans Cdr1p and Cdr2p Transporters. Antimicrob Agents Chemother 2003;47:1543-1554.

PDR_assoc
12430018 The plant PDR family of ABC transporters. Planta 2002;216:95-106.

ABC2_membrane_3

NTPase_1

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_16

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

Ploopntkinase3

AAA_30

AAA_29

AAA_28

AAA_25

AAA_24

AAA_23

AAA_22

AAA_21

AAA_18

DnaB_C

AAA_14

MobB

T2SSE

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

ABC_ATPase

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

Domain	Description	Evalue	Bits	GA	Start	End
ABC_trans_N	ABC-transporter N-terminal	1.4E-13	43	25.40	76	138
RsgA_GTPase	RsgA GTPase	0.0081	7	30.00	148	202
ABC_tran	ABC transporter	8.2E-15	47	23.10	163	345
T2SSE	Type II/IV secretion system protein	0.00055	10	24.90	163	200
ABC_ATPase	Predicted ATPase of the ABC class	0.0015	9	19.30	164	200
DnaB_C	DnaB-like helicase C terminal domain	0.012	6	20.60	166	199
AAA_25	AAA domain	0.00019	12	27.00	166	198
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.11	4	26.60	168	199
AAA_29	P-loop containing region of AAA domain	0.00028	12	27.00	171	193
AAA_30	AAA domain	0.027	5	27.00	172	200
Rad17	Rad17 cell cycle checkpoint protein	0.062	4	19.70	172	201
Ploopntkinase3	P-loop Nucleotide Kinase3	0.0092	7	27.00	173	201
AAA_22	AAA domain	0.0028	9	27.00	173	205
SMC_N	RecF/RecN/SMC N terminal domain	0.06	4	40.00	173	363
AAA_16	AAA ATPase domain	0.00024	13	32.60	174	200
NACHT	NACHT domain	0.046	5	20.40	174	199
AAA_14	AAA domain	0.022	6	27.00	174	198
AAA_23	AAA domain	0.021	7	27.00	174	193
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.015	6	20.70	175	198
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.064	4	20.50	175	196
AAA_24	AAA domain	0.024	6	27.00	175	193
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0083	7	27.00	175	194
AAA_33	AAA domain	0.0083	8	27.00	176	198
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.0012	10	20.00	176	205
MMR_HSR1	GTPase of unknown function	0.0099	7	24.50	177	197
AAA	ATPase family associated with various cellular activities (AAA)	0.00045	12	20.80	177	200
AAA_18	AAA domain	0.01	8	29.40	177	200
AAA_28	AAA domain	0.00065	11	27.00	178	195
NTPase_1	NTPase	0.0018	9	23.90	178	209
MobB	Molybdopterin guanine dinucleotide synthesis protein B	0.028	6	21.60	179	225
AAA_25	AAA domain	0.25	2	27.00	351	374
ABC2_membrane_7	ABC-2 type transporter	1.1E-08	26	22.70	378	430
ABC2_membrane	ABC-2 type transporter	0	169	25.50	499	710
ABC2_membrane_3	ABC-2 family transporter protein	0.19	2	31.60	539	754
PDR_assoc	Plant PDR ABC transporter associated	5.3E-29	91	22.70	716	780
PDR_CDR	CDR ABC transporter	0.08	4	20.50	744	779
RsgA_GTPase	RsgA GTPase	7.4E-05	14	30.00	835	875
DnaB_C	DnaB-like helicase C terminal domain	0.15	3	20.60	839	874
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.013	7	26.60	840	873
ABC_tran	ABC transporter	6.3E-22	70	23.10	842	994
ABC_ATPase	Predicted ATPase of the ABC class	0.67	0	19.30	842	872
AAA_25	AAA domain	0.0012	10	27.00	845	873
SMC_N	RecF/RecN/SMC N terminal domain	0.17	3	40.00	845	872
AAA_29	P-loop containing region of AAA domain	0.00014	13	27.00	852	872
AAA_16	AAA ATPase domain	0.0022	10	32.60	853	907
AAA_30	AAA domain	0.0033	8	27.00	853	873
Rad17	Rad17 cell cycle checkpoint protein	0.026	6	19.70	853	941
AAA_23	AAA domain	0.0037	9	27.00	854	873
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00053	11	27.00	854	921
AAA_33	AAA domain	0.0012	10	27.00	855	885
AAA_22	AAA domain	0.013	7	27.00	855	874
NACHT	NACHT domain	0.014	7	20.40	855	879
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.018	6	20.70	855	873
Ploopntkinase3	P-loop Nucleotide Kinase3	0.29	2	27.00	856	873
MobB	Molybdopterin guanine dinucleotide synthesis protein B	0.048	5	21.60	856	872
AAA_24	AAA domain	0.053	4	27.00	856	870
AAA_14	AAA domain	0.039	5	27.00	856	951
MMR_HSR1	GTPase of unknown function	0.024	6	24.50	856	876
AAA_28	AAA domain	0.027	6	27.00	856	876
AAA_18	AAA domain	0.0027	10	29.40	857	889
AAA	ATPase family associated with various cellular activities (AAA)	0.022	6	20.80	857	991
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.43	2	20.00	857	874
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.029	5	20.50	857	875
SMC_N	RecF/RecN/SMC N terminal domain	0.018	6	40.00	974	1028
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	7.6E-05	14	27.00	982	1027
NTPase_1	NTPase	0.35	2	23.90	1002	1030
ABC2_membrane_7	ABC-2 type transporter	1.2E-09	29	22.70	1023	1084
ABC2_membrane	ABC-2 type transporter	0	193	25.50	1140	1353
ABC2_membrane_7	ABC-2 type transporter	0.75	0	22.70	1216	1263
ABC2_membrane_3	ABC-2 family transporter protein	0.00011	13	31.60	1217	1403
PDR_CDR	CDR ABC transporter	0.016	6	20.50	1374	1412
PDR_assoc	Plant PDR ABC transporter associated	0.054	5	22.70	1391	1412