c2pfam

AT3G16600.1 :

Domain Description Evalue Bits GA Start End
ResIII Type III restriction enzyme, res subunit 1.2E-08 25 20.90 53 250
SNF2_N SNF2 family N-terminal domain 0 208 20.10 68 309
DEAD DEAD/DEAH box helicase 2E-07 21 20.60 79 227
SNF2_N SNF2 family N-terminal domain 0.001 8 20.10 319 357
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 3.8E-09 26 27.00 393 438
zf-rbx1 RING-H2 zinc finger domain 6.4E-06 17 31.00 393 431
zf-RING_6 zf-RING of BARD1-type protein 0.00011 12 35.00 394 423
zf-NOSIP Zinc-finger of nitric oxide synthase-interacting protein 0.03 5 30.00 394 418
zf-RING_2 Ring finger domain 8.6E-08 23 27.30 394 432
zf-C3HC4_4 zinc finger of C3HC4-type, RING 4.2E-06 17 30.00 395 426
Prok-RING_4 Prokaryotic RING finger family 4 1.2E-05 15 27.00 395 440
zf-RING_UBOX RING-type zinc-finger 3.5E-09 27 25.20 395 431
zf-RING_5 zinc-RING finger domain 3.6E-08 23 27.90 395 435
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 6.6E-11 32 27.00 395 431
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 9.9E-11 32 21.00 395 431
Helicase_C Helicase conserved C-terminal domain 7.9E-10 29 20.90 504 552
zf-NOSIP Zinc-finger of nitric oxide synthase-interacting protein 0.022 5 30.00 565 597

638

ResIII
SNF2_N
DEAD
SNF2_N
zf-C3HC4_3
zf-rbx1
zf-RING_6
zf-NOSIP
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-RING_UBOX
zf-RING_5
zf-C3HC4_2
zf-C3HC4
Helicase_C
zf-NOSIP

References:

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

zf-C3HC4_2

SNF2_N

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

Helicase_C

zf-RING_UBOX

zf-RING_6

zf-RING_5

zf-RING_2

zf-rbx1

zf-C3HC4_4

zf-C3HC4_3

Prok-RING_4

zf-NOSIP

ResIII

Domain	Description	Evalue	Bits	GA	Start	End
ResIII	Type III restriction enzyme, res subunit	1.2E-08	25	20.90	53	250
SNF2_N	SNF2 family N-terminal domain	0	208	20.10	68	309
DEAD	DEAD/DEAH box helicase	2E-07	21	20.60	79	227
SNF2_N	SNF2 family N-terminal domain	0.001	8	20.10	319	357
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	3.8E-09	26	27.00	393	438
zf-rbx1	RING-H2 zinc finger domain	6.4E-06	17	31.00	393	431
zf-RING_6	zf-RING of BARD1-type protein	0.00011	12	35.00	394	423
zf-NOSIP	Zinc-finger of nitric oxide synthase-interacting protein	0.03	5	30.00	394	418
zf-RING_2	Ring finger domain	8.6E-08	23	27.30	394	432
zf-C3HC4_4	zinc finger of C3HC4-type, RING	4.2E-06	17	30.00	395	426
Prok-RING_4	Prokaryotic RING finger family 4	1.2E-05	15	27.00	395	440
zf-RING_UBOX	RING-type zinc-finger	3.5E-09	27	25.20	395	431
zf-RING_5	zinc-RING finger domain	3.6E-08	23	27.90	395	435
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	6.6E-11	32	27.00	395	431
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	9.9E-11	32	21.00	395	431
Helicase_C	Helicase conserved C-terminal domain	7.9E-10	29	20.90	504	552
zf-NOSIP	Zinc-finger of nitric oxide synthase-interacting protein	0.022	5	30.00	565	597