c2pfam

AT3G16720.1 :

Domain Description Evalue Bits GA Start End
HemY_N HemY protein N-terminus 4.6E-05 14 28.20 24 74
MscS_TM Mechanosensitive ion channel inner membrane domain 1 1.4E-05 15 28.00 28 74
SDH_sah Serine dehydrogenase proteinase 0.0014 8 19.90 35 76
FANCL_C FANCL C-terminal domain 0.00027 12 20.70 117 156
zf-RING_2 Ring finger domain 2.5E-15 47 27.30 118 161
zf-RING_11 RING-like zinc finger 5.5E-14 42 27.00 118 147
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 5.5E-11 33 27.00 118 160
zf-RING_5 zinc-RING finger domain 2.7E-08 24 27.90 118 161
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 1.9E-07 21 27.00 118 166
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 9.8E-06 16 27.30 118 158
Prok-RING_4 Prokaryotic RING finger family 4 1.7E-05 15 27.00 119 163
zf-RING_UBOX RING-type zinc-finger 4E-08 24 25.20 119 158
RINGv RING-variant domain 0.0018 9 21.60 119 160
zf-C3HC4_4 zinc finger of C3HC4-type, RING 0.0065 7 30.00 119 160
zf-RING_4 RING/Ubox like zinc-binding domain 3.5E-05 14 27.00 119 162
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 6.1E-09 26 21.00 119 160
zf-rbx1 RING-H2 zinc finger domain 1.4E-10 32 31.00 122 161
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 1.4E-07 22 21.40 130 163
zf-RING-like RING-like domain 8.8E-05 13 21.60 137 160
zinc_ribbon_16 Zinc-ribbon like family 0.00074 10 27.00 137 160

304

HemY_N
MscS_TM
SDH_sah
FANCL_C
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
Zn_ribbon_17
Prok-RING_4
zf-RING_UBOX
RINGv
zf-C3HC4_4
zf-RING_4
zf-C3HC4
zf-rbx1
zf-ANAPC11
zf-RING-like
zinc_ribbon_16

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

Zn_ribbon_17

SDH_sah
15752073 Identification and analysis of a new family of bacterial serine proteinases. In Silico Biol. 2004;4:563-572.

MscS_TM

zf-C3HC4_2

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

RINGv

zf-ANAPC11

zinc_ribbon_16

zf-RING_UBOX

zf-RING_5

zf-RING_4

zf-RING_2

zf-rbx1

zf-RING-like

zf-RING_11

zf-C3HC4_4

zf-C3HC4_3

Prok-RING_4

HemY_N
7928957 Bacillus subtilis HemY is a peripheral membrane protein essential for protoheme IX synthesis which can oxidize coproporphyrinogen III and protoporphyrinogen IX. J Bacteriol 1994;176:5962-5970.

Domain	Description	Evalue	Bits	GA	Start	End
HemY_N	HemY protein N-terminus	4.6E-05	14	28.20	24	74
MscS_TM	Mechanosensitive ion channel inner membrane domain 1	1.4E-05	15	28.00	28	74
SDH_sah	Serine dehydrogenase proteinase	0.0014	8	19.90	35	76
FANCL_C	FANCL C-terminal domain	0.00027	12	20.70	117	156
zf-RING_2	Ring finger domain	2.5E-15	47	27.30	118	161
zf-RING_11	RING-like zinc finger	5.5E-14	42	27.00	118	147
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	5.5E-11	33	27.00	118	160
zf-RING_5	zinc-RING finger domain	2.7E-08	24	27.90	118	161
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	1.9E-07	21	27.00	118	166
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	9.8E-06	16	27.30	118	158
Prok-RING_4	Prokaryotic RING finger family 4	1.7E-05	15	27.00	119	163
zf-RING_UBOX	RING-type zinc-finger	4E-08	24	25.20	119	158
RINGv	RING-variant domain	0.0018	9	21.60	119	160
zf-C3HC4_4	zinc finger of C3HC4-type, RING	0.0065	7	30.00	119	160
zf-RING_4	RING/Ubox like zinc-binding domain	3.5E-05	14	27.00	119	162
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	6.1E-09	26	21.00	119	160
zf-rbx1	RING-H2 zinc finger domain	1.4E-10	32	31.00	122	161
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	1.4E-07	22	21.40	130	163
zf-RING-like	RING-like domain	8.8E-05	13	21.60	137	160
zinc_ribbon_16	Zinc-ribbon like family	0.00074	10	27.00	137	160