c2pfam

AT3G16980.1 :

Domain Description Evalue Bits GA Start End
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit 7.3E-16 47 25.20 4 36
UPF0547 Uncharacterised protein family UPF0547 0.025 4 27.10 4 10
Rpr2 RNAse P Rpr2/Rpp21/SNM1 subunit domain 0.004 7 22.60 5 80
TFIIS_C Transcription factor S-II (TFIIS) 0.18 1 20.70 5 12
Zn_ribbon_recom Recombinase zinc beta ribbon domain 0.00062 10 25.30 6 42
zinc_ribbon_4 zinc-ribbon domain 0.94 -1 30.30 7 12
DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit 0.21 1 21.90 7 10
TFIIS_C Transcription factor S-II (TFIIS) 0.0015 8 20.70 21 35
DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit 0.098 2 21.90 27 34
UPF0547 Uncharacterised protein family UPF0547 0.52 0 27.10 28 33
zinc_ribbon_4 zinc-ribbon domain 0.065 2 30.30 28 34
LRV_FeS LRV protein FeS4 cluster 0.0062 6 20.90 28 42
DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit 0.00023 10 21.90 67 82
zinc_ribbon_4 zinc-ribbon domain 7.5E-06 15 30.30 69 81
LRV_FeS LRV protein FeS4 cluster 0.00064 9 20.90 72 84
Zn_ribbon_recom Recombinase zinc beta ribbon domain 0.083 3 25.30 73 92
UPF0547 Uncharacterised protein family UPF0547 0.01 5 27.10 73 82
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit 0.066 2 25.20 74 80
TFIIS_C Transcription factor S-II (TFIIS) 2.2E-15 46 20.70 75 113
UPF0547 Uncharacterised protein family UPF0547 0.0025 7 27.10 103 113
zinc_ribbon_4 zinc-ribbon domain 0.11 2 30.30 106 113
DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit 0.12 1 21.90 107 111

114

RNA_POL_M_15KD
UPF0547
Rpr2
TFIIS_C
Zn_ribbon_recom
zinc_ribbon_4
DNA_RNApol_7kD
TFIIS_C
DNA_RNApol_7kD
UPF0547
zinc_ribbon_4
LRV_FeS
DNA_RNApol_7kD
zinc_ribbon_4
LRV_FeS
Zn_ribbon_recom
UPF0547
RNA_POL_M_15KD
TFIIS_C
UPF0547
zinc_ribbon_4
DNA_RNApol_7kD

References:

Rpr2
11497433 Function and subnuclear distribution of Rpp21, a protein subunit of the human ribonucleoprotein ribonuclease P. RNA 2001;7:1153-1164.
10523674 Mutagenesis of SNM1, which encodes a protein component of the yeast RNase MRP, reveals a role for this ribonucleoprotein endoribonuclease in plasmid segregation. Mol Cell Biol 1999;19:7857-7869.

RNA_POL_M_15KD

LRV_FeS

TFIIS_C

DNA_RNApol_7kD

zinc_ribbon_4

Zn_ribbon_recom

UPF0547

Domain	Description	Evalue	Bits	GA	Start	End
RNA_POL_M_15KD	RNA polymerases M/15 Kd subunit	7.3E-16	47	25.20	4	36
UPF0547	Uncharacterised protein family UPF0547	0.025	4	27.10	4	10
Rpr2	RNAse P Rpr2/Rpp21/SNM1 subunit domain	0.004	7	22.60	5	80
TFIIS_C	Transcription factor S-II (TFIIS)	0.18	1	20.70	5	12
Zn_ribbon_recom	Recombinase zinc beta ribbon domain	0.00062	10	25.30	6	42
zinc_ribbon_4	zinc-ribbon domain	0.94	-1	30.30	7	12
DNA_RNApol_7kD	DNA directed RNA polymerase, 7 kDa subunit	0.21	1	21.90	7	10
TFIIS_C	Transcription factor S-II (TFIIS)	0.0015	8	20.70	21	35
DNA_RNApol_7kD	DNA directed RNA polymerase, 7 kDa subunit	0.098	2	21.90	27	34
UPF0547	Uncharacterised protein family UPF0547	0.52	0	27.10	28	33
zinc_ribbon_4	zinc-ribbon domain	0.065	2	30.30	28	34
LRV_FeS	LRV protein FeS4 cluster	0.0062	6	20.90	28	42
DNA_RNApol_7kD	DNA directed RNA polymerase, 7 kDa subunit	0.00023	10	21.90	67	82
zinc_ribbon_4	zinc-ribbon domain	7.5E-06	15	30.30	69	81
LRV_FeS	LRV protein FeS4 cluster	0.00064	9	20.90	72	84
Zn_ribbon_recom	Recombinase zinc beta ribbon domain	0.083	3	25.30	73	92
UPF0547	Uncharacterised protein family UPF0547	0.01	5	27.10	73	82
RNA_POL_M_15KD	RNA polymerases M/15 Kd subunit	0.066	2	25.20	74	80
TFIIS_C	Transcription factor S-II (TFIIS)	2.2E-15	46	20.70	75	113
UPF0547	Uncharacterised protein family UPF0547	0.0025	7	27.10	103	113
zinc_ribbon_4	zinc-ribbon domain	0.11	2	30.30	106	113
DNA_RNApol_7kD	DNA directed RNA polymerase, 7 kDa subunit	0.12	1	21.90	107	111