c2pfam

AT3G17440.1 :

Domain Description Evalue Bits GA Start End
DUF2203 Uncharacterized conserved protein (DUF2203) 0.0067 8 20.80 9 64
Syntaxin_2 Syntaxin-like protein 0.0014 9 30.50 10 63
Vac_Fusion Chordopoxvirus fusion protein 0.019 5 21.00 10 41
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 0.023 5 30.00 12 83
Occludin_ELL Occludin homology domain 0.00019 13 25.30 15 64
Helo_like_N Fungal N-terminal domain of STAND proteins 4.9E-05 13 27.20 17 75
TMPIT TMPIT-like protein 8.2E-05 12 22.10 24 98
AKNA AT-hook-containing transcription factor 0.054 5 25.00 26 44
Vps53_N Vps53-like, N-terminal 0.03 3 24.00 30 74
Sec20 Sec20 0.079 3 27.00 30 62
Cauli_AT Aphid transmission protein 0.0099 6 21.10 33 68
NPV_P10 Nucleopolyhedrovirus P10 protein 0.035 5 29.80 34 66
V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 0.41 1 24.80 35 53
TipAS TipAS antibiotic-recognition domain 0.00065 11 29.90 38 89
DUF948 Bacterial protein of unknown function (DUF948) 0.22 2 28.10 41 60
YkyA Putative cell-wall binding lipoprotein 0.0018 8 22.00 41 116
DUF2203 Uncharacterized conserved protein (DUF2203) 0.002 9 20.80 43 97
AKNA AT-hook-containing transcription factor 0.019 6 25.00 43 79
Syntaxin_2 Syntaxin-like protein 0.058 4 30.50 43 92
CCDC-167 Coiled-coil domain-containing protein 167 0.00033 11 27.00 43 95
DUF745 Protein of unknown function (DUF745) 0.0072 6 22.40 45 102
Cauli_AT Aphid transmission protein 0.045 4 21.10 91 192
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 4.1E-06 17 30.00 139 213
YkyA Putative cell-wall binding lipoprotein 0.014 5 22.00 140 207
Vps53_N Vps53-like, N-terminal 0.00021 11 24.00 143 212
Helo_like_N Fungal N-terminal domain of STAND proteins 0.43 0 27.20 143 168
DUF948 Bacterial protein of unknown function (DUF948) 0.0024 9 28.10 147 207
DUF2203 Uncharacterized conserved protein (DUF2203) 0.12 4 20.80 149 202
DUF745 Protein of unknown function (DUF745) 0.013 6 22.40 149 208
TMPIT TMPIT-like protein 0.0079 6 22.10 149 219
CCDC-167 Coiled-coil domain-containing protein 167 0.32 2 27.00 151 225
V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 9.6E-10 29 24.80 152 210
Sec20 Sec20 7.1E-09 26 27.00 154 229
Cauli_AT Aphid transmission protein 0.024 5 21.10 154 217
NPV_P10 Nucleopolyhedrovirus P10 protein 0.024 6 29.80 155 195
AKNA AT-hook-containing transcription factor 0.1 4 25.00 162 186
Vac_Fusion Chordopoxvirus fusion protein 0.00097 9 21.00 171 195
Syntaxin_2 Syntaxin-like protein 0.096 3 30.50 187 212
DUF948 Bacterial protein of unknown function (DUF948) 0.64 1 28.10 220 248

269

DUF2203
Syntaxin_2
Vac_Fusion
MCPsignal
Occludin_ELL
Helo_like_N
TMPIT
AKNA
Vps53_N
Sec20
Cauli_AT
NPV_P10
V-SNARE_C
TipAS
DUF948
YkyA
DUF2203
AKNA
Syntaxin_2
CCDC-167
DUF745
Cauli_AT
MCPsignal
YkyA
Vps53_N
Helo_like_N
DUF948
DUF2203
DUF745
TMPIT
CCDC-167
V-SNARE_C
Sec20
Cauli_AT
NPV_P10
AKNA
Vac_Fusion
Syntaxin_2
DUF948

References:

YkyA
16684363 Conserved genes in a path from commensalism to pathogenicity: comparative phylogenetic profiles of Staphylococcus epidermidis RP62A and ATCC12228. BMC Genomics. 2006;7:112.

NPV_P10
9634101 The single-nucleocapsid nucleopolyhedrovirus of Buzura suppressaria encodes a P10 protein. J Gen Virol 1998;79:1553-1562.

Helo_like_N

DUF948

CCDC-167

Occludin_ELL
8276896 Occludin: a novel integral membrane protein localizing at tight junctions. J Cell Biol 1993;123:1777-1788.
8596958 An RNA polymerase II elongation factor encoded by the human ELL gene. Science 1996;271:1873-1876.
16081103 Structure of the conserved cytoplasmic C-terminal domain of occludin: identification of the ZO-1 binding surface. J Mol Biol. 2005;352:151-164.

TipAS
12682015 Structural basis for antibiotic recognition by the TipA class of multidrug-resistance transcriptional regulators. EMBO J 2003;22:1824-1834.

AKNA
15869410 The human AKNA gene expresses multiple transcripts and protein isoforms as a result of alternative promoter usage, splicing, and polyadenylation. DNA Cell Biol. 2005;24:325-338.

TMPIT

DUF745

Sec20
8334998 The TIP1 gene of Saccharomyces cerevisiae encodes an 80 kDa cytoplasmic protein that interacts with the cytoplasmic domain of Sec20p. EMBO J 1993;12:2831-2840.

DUF2203

Vac_Fusion
2389560 Vaccinia virus induces cell fusion at acid pH and this activity is mediated by the N-terminus of the 14-kDa virus envelope protein. Virology 1990;178:81-91.

Syntaxin_2

MCPsignal
1601874 Sequence and characterization of Bacillus subtilis CheW. J Biol Chem 1992;267:12055-12060.

Cauli_AT
10601029 Aphid transmission of cauliflower mosaic virus requires the viral PIII protein. EMBO J 1999;18:7077-7085.
6311674 Aphid transmission and a polypeptide are specified by a defined region of the cauliflower mosaic virus genome. Gene 1983;23:15-23.

V-SNARE_C
19064671 Binding interactions control SNARE specificity in vivo. J Cell Biol. 2008;183:1089-1100.

Vps53_N
1063730 A new translocation in chronic myelogenous leukemia. Hum Genet 1976;32:229-232.

Domain	Description	Evalue	Bits	GA	Start	End
DUF2203	Uncharacterized conserved protein (DUF2203)	0.0067	8	20.80	9	64
Syntaxin_2	Syntaxin-like protein	0.0014	9	30.50	10	63
Vac_Fusion	Chordopoxvirus fusion protein	0.019	5	21.00	10	41
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	0.023	5	30.00	12	83
Occludin_ELL	Occludin homology domain	0.00019	13	25.30	15	64
Helo_like_N	Fungal N-terminal domain of STAND proteins	4.9E-05	13	27.20	17	75
TMPIT	TMPIT-like protein	8.2E-05	12	22.10	24	98
AKNA	AT-hook-containing transcription factor	0.054	5	25.00	26	44
Vps53_N	Vps53-like, N-terminal	0.03	3	24.00	30	74
Sec20	Sec20	0.079	3	27.00	30	62
Cauli_AT	Aphid transmission protein	0.0099	6	21.10	33	68
NPV_P10	Nucleopolyhedrovirus P10 protein	0.035	5	29.80	34	66
V-SNARE_C	Snare region anchored in the vesicle membrane C-terminus	0.41	1	24.80	35	53
TipAS	TipAS antibiotic-recognition domain	0.00065	11	29.90	38	89
DUF948	Bacterial protein of unknown function (DUF948)	0.22	2	28.10	41	60
YkyA	Putative cell-wall binding lipoprotein	0.0018	8	22.00	41	116
DUF2203	Uncharacterized conserved protein (DUF2203)	0.002	9	20.80	43	97
AKNA	AT-hook-containing transcription factor	0.019	6	25.00	43	79
Syntaxin_2	Syntaxin-like protein	0.058	4	30.50	43	92
CCDC-167	Coiled-coil domain-containing protein 167	0.00033	11	27.00	43	95
DUF745	Protein of unknown function (DUF745)	0.0072	6	22.40	45	102
Cauli_AT	Aphid transmission protein	0.045	4	21.10	91	192
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	4.1E-06	17	30.00	139	213
YkyA	Putative cell-wall binding lipoprotein	0.014	5	22.00	140	207
Vps53_N	Vps53-like, N-terminal	0.00021	11	24.00	143	212
Helo_like_N	Fungal N-terminal domain of STAND proteins	0.43	0	27.20	143	168
DUF948	Bacterial protein of unknown function (DUF948)	0.0024	9	28.10	147	207
DUF2203	Uncharacterized conserved protein (DUF2203)	0.12	4	20.80	149	202
DUF745	Protein of unknown function (DUF745)	0.013	6	22.40	149	208
TMPIT	TMPIT-like protein	0.0079	6	22.10	149	219
CCDC-167	Coiled-coil domain-containing protein 167	0.32	2	27.00	151	225
V-SNARE_C	Snare region anchored in the vesicle membrane C-terminus	9.6E-10	29	24.80	152	210
Sec20	Sec20	7.1E-09	26	27.00	154	229
Cauli_AT	Aphid transmission protein	0.024	5	21.10	154	217
NPV_P10	Nucleopolyhedrovirus P10 protein	0.024	6	29.80	155	195
AKNA	AT-hook-containing transcription factor	0.1	4	25.00	162	186
Vac_Fusion	Chordopoxvirus fusion protein	0.00097	9	21.00	171	195
Syntaxin_2	Syntaxin-like protein	0.096	3	30.50	187	212
DUF948	Bacterial protein of unknown function (DUF948)	0.64	1	28.10	220	248