c2pfam

AT3G18140.1 :

Domain Description Evalue Bits GA Start End
WD40 WD domain, G-beta repeat 0.00047 11 21.00 7 20
Nup160 Nucleoporin Nup120/160 8.5E-06 14 19.20 7 47
Nucleoporin_N Nup133 N terminal like 0.43 -2 23.70 7 29
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.017 3 29.50 8 36
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.00011 12 22.90 9 88
VID27 VID27 cytoplasmic protein 0.16 0 27.20 9 65
eIF2A Eukaryotic translation initiation factor eIF2A 0.84 -1 20.50 17 53
WD40 WD domain, G-beta repeat 4E-05 14 21.00 35 62
Peptidase_S8 Subtilase family 5.6E-05 12 20.10 52 122
eIF2A Eukaryotic translation initiation factor eIF2A 0.14 1 20.50 57 123
WD40 WD domain, G-beta repeat 7.1E-11 32 21.00 69 106
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.021 3 29.50 70 107
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.0037 7 22.90 73 108
Hira TUP1-like enhancer of split 0.0046 6 20.30 84 124
Nucleoporin_N Nup133 N terminal like 0.00039 9 23.70 91 137
Nup160 Nucleoporin Nup120/160 0.12 0 19.20 92 108
eIF2A Eukaryotic translation initiation factor eIF2A 0.026 4 20.50 96 152
PALB2_WD40 Partner and localizer of BRCA2 WD40 domain 0.039 2 27.00 99 144
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.014 5 22.90 103 156
WD40 WD domain, G-beta repeat 1.2E-05 16 21.00 121 147
Nup160 Nucleoporin Nup120/160 0.01 4 19.20 124 153
Hira TUP1-like enhancer of split 0.037 3 20.30 125 155
Nucleoporin_N Nup133 N terminal like 0.019 3 23.70 127 158
VID27 VID27 cytoplasmic protein 0.001 8 27.20 130 181
PALB2_WD40 Partner and localizer of BRCA2 WD40 domain 3E-05 12 27.00 140 189
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.031 4 22.90 144 195
Nup160 Nucleoporin Nup120/160 0.24 -1 19.20 162 201
WD40 WD domain, G-beta repeat 0.43 1 21.00 165 189
Hira TUP1-like enhancer of split 0.013 5 20.30 171 206
WD40 WD domain, G-beta repeat 6E-10 29 21.00 202 239
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.00045 9 29.50 205 240
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.036 4 22.90 210 242
eIF2A Eukaryotic translation initiation factor eIF2A 2.7E-05 14 20.50 218 276
Hira TUP1-like enhancer of split 0.14 1 20.30 218 242
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 1.9E-06 18 22.90 220 301
Nucleoporin_N Nup133 N terminal like 0.039 2 23.70 221 249
Nup160 Nucleoporin Nup120/160 0.00015 10 19.20 222 242
WD40 WD domain, G-beta repeat 4.1E-09 27 21.00 245 281
PALB2_WD40 Partner and localizer of BRCA2 WD40 domain 0.99 -3 27.00 249 249
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.01 4 29.50 254 281
Nup160 Nucleoporin Nup120/160 0.046 2 19.20 262 286
WD40 WD domain, G-beta repeat 0.064 4 21.00 285 302

305

WD40
Nup160
Nucleoporin_N
Ge1_WD40
ANAPC4_WD40
VID27
eIF2A
WD40
Peptidase_S8
eIF2A
WD40
Ge1_WD40
ANAPC4_WD40
Hira
Nucleoporin_N
Nup160
eIF2A
PALB2_WD40
ANAPC4_WD40
WD40
Nup160
Hira
Nucleoporin_N
VID27
PALB2_WD40
ANAPC4_WD40
Nup160
WD40
Hira
WD40
Ge1_WD40
ANAPC4_WD40
eIF2A
Hira
ANAPC4_WD40
Nucleoporin_N
Nup160
WD40
PALB2_WD40
Ge1_WD40
Nup160
WD40

References:

ANAPC4_WD40

Ge1_WD40

PALB2_WD40

Nup160
8557736 Nup120p: a yeast nucleoporin required for NPC distribution and mRNA transport. J Cell Biol. 1995;131:1659-1675.
11684705 Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. J Cell Biol 2001;155:339-354.
17360435 Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc Natl Acad Sci U S A. 2007;104:3811-3816.

Hira
8681138 Structural Organization of the WD repeat protein-encoding gene HIRA in the DiGeorge syndrome critical region of human chromosome 22. Genome Res 1996;6:43-50.
9063744 Cloning and developmental expression analysis of chick Hira (Chira), a candidate gene for DiGeorge syndrome. Hum Mol Genet 1997;6:237-245.
9524281 Isolation and genomic characterization of the TUPLE1/HIRA gene of the pufferfish Fugu rubripes. Gene 1998;208:279-283.
9710638 Core histones and HIRIP3, a novel histone-binding protein, directly interact with WD repeat protein HIRA. Mol Cell Biol 1998;18:5546-5556.

WD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

Nucleoporin_N
15557116 Structural and functional analysis of Nup133 domains reveals modular building blocks of the nuclear pore complex. J Cell Biol. 2004;167:591-597.

Peptidase_S8

eIF2A
12133843 Characterization of mammalian eIF2A and identification of the yeast homolog. J Biol Chem. 2002;277:37079-37087.

VID27

Domain	Description	Evalue	Bits	GA	Start	End
WD40	WD domain, G-beta repeat	0.00047	11	21.00	7	20
Nup160	Nucleoporin Nup120/160	8.5E-06	14	19.20	7	47
Nucleoporin_N	Nup133 N terminal like	0.43	-2	23.70	7	29
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.017	3	29.50	8	36
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.00011	12	22.90	9	88
VID27	VID27 cytoplasmic protein	0.16	0	27.20	9	65
eIF2A	Eukaryotic translation initiation factor eIF2A	0.84	-1	20.50	17	53
WD40	WD domain, G-beta repeat	4E-05	14	21.00	35	62
Peptidase_S8	Subtilase family	5.6E-05	12	20.10	52	122
eIF2A	Eukaryotic translation initiation factor eIF2A	0.14	1	20.50	57	123
WD40	WD domain, G-beta repeat	7.1E-11	32	21.00	69	106
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.021	3	29.50	70	107
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.0037	7	22.90	73	108
Hira	TUP1-like enhancer of split	0.0046	6	20.30	84	124
Nucleoporin_N	Nup133 N terminal like	0.00039	9	23.70	91	137
Nup160	Nucleoporin Nup120/160	0.12	0	19.20	92	108
eIF2A	Eukaryotic translation initiation factor eIF2A	0.026	4	20.50	96	152
PALB2_WD40	Partner and localizer of BRCA2 WD40 domain	0.039	2	27.00	99	144
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.014	5	22.90	103	156
WD40	WD domain, G-beta repeat	1.2E-05	16	21.00	121	147
Nup160	Nucleoporin Nup120/160	0.01	4	19.20	124	153
Hira	TUP1-like enhancer of split	0.037	3	20.30	125	155
Nucleoporin_N	Nup133 N terminal like	0.019	3	23.70	127	158
VID27	VID27 cytoplasmic protein	0.001	8	27.20	130	181
PALB2_WD40	Partner and localizer of BRCA2 WD40 domain	3E-05	12	27.00	140	189
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.031	4	22.90	144	195
Nup160	Nucleoporin Nup120/160	0.24	-1	19.20	162	201
WD40	WD domain, G-beta repeat	0.43	1	21.00	165	189
Hira	TUP1-like enhancer of split	0.013	5	20.30	171	206
WD40	WD domain, G-beta repeat	6E-10	29	21.00	202	239
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.00045	9	29.50	205	240
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.036	4	22.90	210	242
eIF2A	Eukaryotic translation initiation factor eIF2A	2.7E-05	14	20.50	218	276
Hira	TUP1-like enhancer of split	0.14	1	20.30	218	242
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	1.9E-06	18	22.90	220	301
Nucleoporin_N	Nup133 N terminal like	0.039	2	23.70	221	249
Nup160	Nucleoporin Nup120/160	0.00015	10	19.20	222	242
WD40	WD domain, G-beta repeat	4.1E-09	27	21.00	245	281
PALB2_WD40	Partner and localizer of BRCA2 WD40 domain	0.99	-3	27.00	249	249
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.01	4	29.50	254	281
Nup160	Nucleoporin Nup120/160	0.046	2	19.20	262	286
WD40	WD domain, G-beta repeat	0.064	4	21.00	285	302