c2pfam

AT3G18970.1 :

Domain Description Evalue Bits GA Start End
PPR_1 PPR repeat 0.035 3 23.80 72 83
PPR_long Pentacotripeptide-repeat region of PRORP 1.2E-05 13 27.00 74 175
PPR_2 PPR repeat family 0.16 1 30.00 79 119
PPR_2 PPR repeat family 1.5E-05 14 30.00 151 176
PPR_1 PPR repeat 5.5E-06 15 23.80 151 173
PPR PPR repeat 2.3E-07 20 25.00 151 176
PPR_3 Pentatricopeptide repeat domain 2.7E-06 16 25.00 151 187
PPR_1 PPR repeat 4.3E-05 12 23.80 177 191
PPR_2 PPR repeat family 4.4E-07 19 30.00 177 229
PPR PPR repeat 7.2E-06 15 25.00 179 192
PPR_3 Pentatricopeptide repeat domain 0.17 1 25.00 222 258
Ribosomal_L12_N Ribosomal protein L7/L12 dimerisation domain 0.095 1 25.00 226 250
PPR_3 Pentatricopeptide repeat domain 0.0036 6 25.00 254 287
PPR_2 PPR repeat family 5.7E-07 19 30.00 256 299
PPR PPR repeat 3.2E-07 19 25.00 261 288
PPR_1 PPR repeat 0.00047 9 23.80 261 284
PPR_long Pentacotripeptide-repeat region of PRORP 1.7E-08 23 27.00 269 382
PPR_2 PPR repeat family 1.3E-11 33 30.00 286 333
PPR_1 PPR repeat 0.0075 5 23.80 287 314
PPR PPR repeat 5.1E-06 16 25.00 289 319
PPR_3 Pentatricopeptide repeat domain 1.8E-08 23 25.00 310 371
PPR_1 PPR repeat 4.4E-08 22 23.80 318 350
PPR PPR repeat 1.2E-08 24 25.00 324 351
PPR_2 PPR repeat family 4.5E-06 16 30.00 324 357
Ribosomal_L12_N Ribosomal protein L7/L12 dimerisation domain 0.0015 7 25.00 344 356
PPR_1 PPR repeat 5.8E-05 12 23.80 354 381
PPR PPR repeat 0.00085 9 25.00 361 385
PPR_2 PPR repeat family 0.041 3 30.00 362 385
PPR_3 Pentatricopeptide repeat domain 0.015 4 25.00 434 464
PPR PPR repeat 5.5E-06 15 25.00 435 463
PPR_2 PPR repeat family 0.00058 9 30.00 440 464
Ribosomal_L12_N Ribosomal protein L7/L12 dimerisation domain 0.97 -2 25.00 450 461

472

PPR_1
PPR_long
PPR_2
PPR_2
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
Ribosomal_L12_N
PPR_3
PPR_2
PPR
PPR_1
PPR_long
PPR_2
PPR_1
PPR
PPR_3
PPR_1
PPR
PPR_2
Ribosomal_L12_N
PPR_1
PPR
PPR_2
PPR_3
PPR
PPR_2
Ribosomal_L12_N

References:

Ribosomal_L12_N

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_1	PPR repeat	0.035	3	23.80	72	83
PPR_long	Pentacotripeptide-repeat region of PRORP	1.2E-05	13	27.00	74	175
PPR_2	PPR repeat family	0.16	1	30.00	79	119
PPR_2	PPR repeat family	1.5E-05	14	30.00	151	176
PPR_1	PPR repeat	5.5E-06	15	23.80	151	173
PPR	PPR repeat	2.3E-07	20	25.00	151	176
PPR_3	Pentatricopeptide repeat domain	2.7E-06	16	25.00	151	187
PPR_1	PPR repeat	4.3E-05	12	23.80	177	191
PPR_2	PPR repeat family	4.4E-07	19	30.00	177	229
PPR	PPR repeat	7.2E-06	15	25.00	179	192
PPR_3	Pentatricopeptide repeat domain	0.17	1	25.00	222	258
Ribosomal_L12_N	Ribosomal protein L7/L12 dimerisation domain	0.095	1	25.00	226	250
PPR_3	Pentatricopeptide repeat domain	0.0036	6	25.00	254	287
PPR_2	PPR repeat family	5.7E-07	19	30.00	256	299
PPR	PPR repeat	3.2E-07	19	25.00	261	288
PPR_1	PPR repeat	0.00047	9	23.80	261	284
PPR_long	Pentacotripeptide-repeat region of PRORP	1.7E-08	23	27.00	269	382
PPR_2	PPR repeat family	1.3E-11	33	30.00	286	333
PPR_1	PPR repeat	0.0075	5	23.80	287	314
PPR	PPR repeat	5.1E-06	16	25.00	289	319
PPR_3	Pentatricopeptide repeat domain	1.8E-08	23	25.00	310	371
PPR_1	PPR repeat	4.4E-08	22	23.80	318	350
PPR	PPR repeat	1.2E-08	24	25.00	324	351
PPR_2	PPR repeat family	4.5E-06	16	30.00	324	357
Ribosomal_L12_N	Ribosomal protein L7/L12 dimerisation domain	0.0015	7	25.00	344	356
PPR_1	PPR repeat	5.8E-05	12	23.80	354	381
PPR	PPR repeat	0.00085	9	25.00	361	385
PPR_2	PPR repeat family	0.041	3	30.00	362	385
PPR_3	Pentatricopeptide repeat domain	0.015	4	25.00	434	464
PPR	PPR repeat	5.5E-06	15	25.00	435	463
PPR_2	PPR repeat family	0.00058	9	30.00	440	464
Ribosomal_L12_N	Ribosomal protein L7/L12 dimerisation domain	0.97	-2	25.00	450	461