c2pfam

AT3G19740.1 :

Domain Description Evalue Bits GA Start End
AAA_16 AAA ATPase domain 0.36 2 32.60 192 300
AAA_28 AAA domain 0.32 2 27.00 237 274
RRN3 RNA polymerase I specific transcription initiation factor RRN3 0.00074 9 20.60 261 354
ABC_tran ABC transporter 0.16 3 23.10 299 388
IstB_IS21 IstB-like ATP binding protein 7.7E-07 19 24.10 733 769
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00049 11 26.60 736 766
AAA_7 P-loop containing dynein motor region 0.00044 10 25.80 736 764
AAA_16 AAA ATPase domain 7.7E-06 17 32.60 738 769
AAA_25 AAA domain 0.00035 11 27.00 738 761
TIP49 TIP49 C-terminus 6.2E-07 19 23.80 740 790
AAA_22 AAA domain 7E-07 20 27.00 740 792
RuvB_N Holliday junction DNA helicase ruvB N-terminus 2.8E-07 21 20.00 741 809
AAA_33 AAA domain 9.8E-06 16 27.00 742 784
AAA ATPase family associated with various cellular activities (AAA) 1.4E-38 123 20.80 742 872
ABC_tran ABC transporter 0.0024 9 23.10 742 764
AAA_28 AAA domain 6.7E-05 14 27.00 742 768
AAA_5 AAA domain (dynein-related subfamily) 2.5E-05 15 20.80 742 773
AAA_14 AAA domain 9.4E-05 13 27.00 742 810
RNA_helicase RNA helicase 0.00011 13 21.50 742 767
Mg_chelatase Magnesium chelatase, subunit ChlI 3.7E-05 14 20.30 742 760
AAA_24 AAA domain 0.00016 12 27.00 742 766
AAA_18 AAA domain 3.2E-07 22 29.40 742 877
AAA_3 ATPase family associated with various cellular activities (AAA) 0.0006 10 21.10 742 781
PhoH PhoH-like protein 0.00026 11 20.10 743 763
AAA_16 AAA ATPase domain 0.13 3 32.60 784 809
AAA_lid_3 AAA+ lid domain 1.3E-12 38 27.20 897 931

993

AAA_16
AAA_28
RRN3
ABC_tran
IstB_IS21
TsaE
AAA_7
AAA_16
AAA_25
TIP49
AAA_22
RuvB_N
AAA_33
AAA
ABC_tran
AAA_28
AAA_5
AAA_14
RNA_helicase
Mg_chelatase
AAA_24
AAA_18
AAA_3
PhoH
AAA_16
AAA_lid_3

References:

IstB_IS21

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

TsaE

AAA_lid_3

AAA_24

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_7

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA_33

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_28

AAA_3
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_25

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

RRN3
8670901 RRN3 gene of Saccharomyces cerevisiae encodes an essential RNA polymerase I transcription factor which interacts with the polymerase independently of DNA template. EMBO J 1996;15:3964-3973.

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
AAA_16	AAA ATPase domain	0.36	2	32.60	192	300
AAA_28	AAA domain	0.32	2	27.00	237	274
RRN3	RNA polymerase I specific transcription initiation factor RRN3	0.00074	9	20.60	261	354
ABC_tran	ABC transporter	0.16	3	23.10	299	388
IstB_IS21	IstB-like ATP binding protein	7.7E-07	19	24.10	733	769
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00049	11	26.60	736	766
AAA_7	P-loop containing dynein motor region	0.00044	10	25.80	736	764
AAA_16	AAA ATPase domain	7.7E-06	17	32.60	738	769
AAA_25	AAA domain	0.00035	11	27.00	738	761
TIP49	TIP49 C-terminus	6.2E-07	19	23.80	740	790
AAA_22	AAA domain	7E-07	20	27.00	740	792
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	2.8E-07	21	20.00	741	809
AAA_33	AAA domain	9.8E-06	16	27.00	742	784
AAA	ATPase family associated with various cellular activities (AAA)	1.4E-38	123	20.80	742	872
ABC_tran	ABC transporter	0.0024	9	23.10	742	764
AAA_28	AAA domain	6.7E-05	14	27.00	742	768
AAA_5	AAA domain (dynein-related subfamily)	2.5E-05	15	20.80	742	773
AAA_14	AAA domain	9.4E-05	13	27.00	742	810
RNA_helicase	RNA helicase	0.00011	13	21.50	742	767
Mg_chelatase	Magnesium chelatase, subunit ChlI	3.7E-05	14	20.30	742	760
AAA_24	AAA domain	0.00016	12	27.00	742	766
AAA_18	AAA domain	3.2E-07	22	29.40	742	877
AAA_3	ATPase family associated with various cellular activities (AAA)	0.0006	10	21.10	742	781
PhoH	PhoH-like protein	0.00026	11	20.10	743	763
AAA_16	AAA ATPase domain	0.13	3	32.60	784	809
AAA_lid_3	AAA+ lid domain	1.3E-12	38	27.20	897	931