c2pfam

AT3G19860.1 :

Domain Description Evalue Bits GA Start End
HLH Helix-loop-helix DNA-binding domain 6.1E-11 33 20.70 6 55
DUF1640 Protein of unknown function (DUF1640) 0.00018 12 24.20 12 108
Phage_GPO Phage capsid scaffolding protein (GPO) serine peptidase 0.00041 11 21.10 24 107
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.00018 12 38.00 25 104
Cep57_MT_bd Centrosome microtubule-binding domain of Cep57 0.00034 12 31.30 37 96
Spc7 Spc7 kinetochore protein 6.5E-05 13 34.00 40 102
DUF4140 N-terminal domain of unknown function (DUF4140) 0.00013 13 27.00 40 95
DUF948 Bacterial protein of unknown function (DUF948) 0.00045 11 28.10 45 85
FapA Flagellar Assembly Protein A 0.0017 8 36.70 46 101
UPF0242 Uncharacterised protein family (UPF0242) 1.4E-06 19 23.70 46 106
DHR10 Designed helical repeat protein 10 domain 0.00016 12 28.40 46 88
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 1.3E-07 22 28.70 47 101
DUF2203 Uncharacterized conserved protein (DUF2203) 0.00053 11 20.80 48 114
APG6_N Apg6 coiled-coil region 3.4E-05 15 45.00 49 107
DUF3450 Protein of unknown function (DUF3450) 0.00018 12 26.90 49 100
CENP-H Centromere protein H (CENP-H) 0.00024 12 23.00 49 95
PI_PP_I Phosphoinositide phosphatase insertion domain 8.6E-05 13 28.50 50 109
ZapB Cell division protein ZapB 1.9E-06 19 31.20 50 97
YabA Initiation control protein YabA 4.6E-05 15 30.00 52 92
NBD94 Nucleotide-Binding Domain 94 of RH 8.6E-06 17 25.00 53 106
FtsL Cell division protein FtsL 0.39 2 22.90 53 74
SKA2 Spindle and kinetochore-associated protein 2 9.6E-06 16 29.90 54 86
DivIC Septum formation initiator 0.00019 12 24.00 56 93
HALZ Homeobox associated leucine zipper 0.00093 10 26.30 58 86
FtsL Cell division protein FtsL 0.004 8 22.90 70 102
HALZ Homeobox associated leucine zipper 0.68 1 26.30 89 100
DHR10 Designed helical repeat protein 10 domain 0.67 1 28.40 201 252

284

HLH
DUF1640
Phage_GPO
Baculo_PEP_C
Cep57_MT_bd
Spc7
DUF4140
DUF948
FapA
UPF0242
DHR10
TMF_TATA_bd
DUF2203
APG6_N
DUF3450
CENP-H
PI_PP_I
ZapB
YabA
NBD94
FtsL
SKA2
DivIC
HALZ
FtsL
HALZ
DHR10

References:

UPF0242

DivIC
8113187 Characterization of a cell division gene from Bacillus subtilis that is required for vegetative and sporulation septum formation. J Bacteriol 1994;176:1451-1459.

FtsL
1332942 FtsL, an essential cytoplasmic membrane protein involved in cell division in Escherichia coli. J Bacteriol 1992;174:7716-7728.
10986263 Analysis of the essential cell division gene ftsL of Bacillus subtilis by mutagenesis and heterologous complementation. J Bacteriol 2000;182:5572-5579.
10844672 The Bacillus subtilis cell division protein FtsL localizes to sites of septation and interacts with DivIC. Mol Microbiol 2000;36:846-855.
11994149 The Bacillus subtilis cell division proteins FtsL and DivIC are intrinsically unstable and do not interact with one another in the absence of other septasomal components. Mol Microbiol 2002;44:663-674.

DUF948

DUF2203

SKA2

PI_PP_I

DUF3450

CENP-H
10488063 Characterization of a novel kinetochore protein, CENP-H. J Biol Chem 1999;274:27343-27346.
11500386 CENP-H, a constitutive centromere component, is required for centromere targeting of CENP-C in vertebrate cells. EMBO J 2001;20:4603-4617.

APG6_N

Baculo_PEP_C
8176372 Orgyia pseudotsugata baculovirus p10 and polyhedron envelope protein genes: analysis of their relative expression levels and role in polyhedron structure. J Gen Virol 1994;75:1115-1123.

Phage_GPO
1837355 Nucleotide sequence of the DNA packaging and capsid synthesis genes of bacteriophage P2. Nucleic Acids Res 1991;19:7207-7214.
19064277 Functional domains of the bacteriophage P2 scaffolding protein: Identification of residues involved in assembly and protease activity. 2008; [Epub ahead of print]

HLH
7553065 Transcription factors 2: helix-loop-helix. Protein Profile 1995;2:621-702.

NBD94

ZapB

FapA

DUF1640

YabA

Cep57_MT_bd

TMF_TATA_bd
1409643 Cloning and chromosomal mapping of a human immunodeficiency virus 1 "TATA" element modulatory factor. Proc Natl Acad Sci U S A. 1992;89:9372-9376.
15128430 TMF is a golgin that binds Rab6 and influences Golgi morphology. BMC Cell Biol. 2004;5:18.
18182439 Localization and domain characterization of Arabidopsis golgin candidates. J Exp Bot. 2007;58:4373-4386.

DUF4140

DHR10

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

HALZ

Domain	Description	Evalue	Bits	GA	Start	End
HLH	Helix-loop-helix DNA-binding domain	6.1E-11	33	20.70	6	55
DUF1640	Protein of unknown function (DUF1640)	0.00018	12	24.20	12	108
Phage_GPO	Phage capsid scaffolding protein (GPO) serine peptidase	0.00041	11	21.10	24	107
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.00018	12	38.00	25	104
Cep57_MT_bd	Centrosome microtubule-binding domain of Cep57	0.00034	12	31.30	37	96
Spc7	Spc7 kinetochore protein	6.5E-05	13	34.00	40	102
DUF4140	N-terminal domain of unknown function (DUF4140)	0.00013	13	27.00	40	95
DUF948	Bacterial protein of unknown function (DUF948)	0.00045	11	28.10	45	85
FapA	Flagellar Assembly Protein A	0.0017	8	36.70	46	101
UPF0242	Uncharacterised protein family (UPF0242)	1.4E-06	19	23.70	46	106
DHR10	Designed helical repeat protein 10 domain	0.00016	12	28.40	46	88
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	1.3E-07	22	28.70	47	101
DUF2203	Uncharacterized conserved protein (DUF2203)	0.00053	11	20.80	48	114
APG6_N	Apg6 coiled-coil region	3.4E-05	15	45.00	49	107
DUF3450	Protein of unknown function (DUF3450)	0.00018	12	26.90	49	100
CENP-H	Centromere protein H (CENP-H)	0.00024	12	23.00	49	95
PI_PP_I	Phosphoinositide phosphatase insertion domain	8.6E-05	13	28.50	50	109
ZapB	Cell division protein ZapB	1.9E-06	19	31.20	50	97
YabA	Initiation control protein YabA	4.6E-05	15	30.00	52	92
NBD94	Nucleotide-Binding Domain 94 of RH	8.6E-06	17	25.00	53	106
FtsL	Cell division protein FtsL	0.39	2	22.90	53	74
SKA2	Spindle and kinetochore-associated protein 2	9.6E-06	16	29.90	54	86
DivIC	Septum formation initiator	0.00019	12	24.00	56	93
HALZ	Homeobox associated leucine zipper	0.00093	10	26.30	58	86
FtsL	Cell division protein FtsL	0.004	8	22.90	70	102
HALZ	Homeobox associated leucine zipper	0.68	1	26.30	89	100
DHR10	Designed helical repeat protein 10 domain	0.67	1	28.40	201	252