c2pfam

AT3G19910.1 :

Domain Description Evalue Bits GA Start End
CDC45 CDC45-like protein 0.0075 5 26.70 99 206
zf-rbx1 RING-H2 zinc finger domain 8.7E-13 39 31.00 282 328
Prok-RING_1 Prokaryotic RING finger family 1 1.1E-05 16 29.10 284 316
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 1.5E-06 18 27.30 285 327
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 4.5E-10 30 27.00 285 334
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 1.3E-07 22 21.40 285 331
zf-RING_2 Ring finger domain 2.3E-15 47 27.30 287 328
RINGv RING-variant domain 0.00011 13 21.60 288 328
PHD PHD-finger 0.00074 10 27.90 288 329
zf-RING_UBOX RING-type zinc-finger 2.3E-07 21 25.20 288 325
Prok-RING_4 Prokaryotic RING finger family 4 1.4E-06 19 27.00 288 335
zf-RING_5 zinc-RING finger domain 2.2E-12 37 27.90 288 329
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.1E-10 32 27.00 288 328
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.9E-10 30 21.00 288 328
zf-RING_11 RING-like zinc finger 2.3E-10 31 27.00 288 315
zinc_ribbon_16 Zinc-ribbon like family 0.00016 12 27.00 304 332
FANCL_C FANCL C-terminal domain 0.026 5 20.70 305 323
zf-C3H2C3 Zinc-finger 3E-05 15 27.00 306 328
zf-Nse Zinc-finger of the MIZ type in Nse subunit 0.0015 9 20.70 306 329
Prok-RING_1 Prokaryotic RING finger family 1 0.085 3 29.10 321 333
UPF0547 Uncharacterised protein family UPF0547 0.00049 11 27.10 323 335

340

CDC45
zf-rbx1
Prok-RING_1
Zn_ribbon_17
zf-C3HC4_3
zf-ANAPC11
zf-RING_2
RINGv
PHD
zf-RING_UBOX
Prok-RING_4
zf-RING_5
zf-C3HC4_2
zf-C3HC4
zf-RING_11
zinc_ribbon_16
FANCL_C
zf-C3H2C3
zf-Nse
Prok-RING_1
UPF0547

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

Zn_ribbon_17

zf-C3HC4_2

zf-C3H2C3

zf-RING_11

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-ANAPC11

zinc_ribbon_16

zf-RING_UBOX

zf-rbx1

zf-RING_5

zf-RING_2

CDC45
9660782 The human homolog of Saccharomyces cerevisiae CDC45. J Biol Chem 1998;273:18205-18209.

UPF0547

RINGv

zf-C3HC4_3

Prok-RING_4

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
CDC45	CDC45-like protein	0.0075	5	26.70	99	206
zf-rbx1	RING-H2 zinc finger domain	8.7E-13	39	31.00	282	328
Prok-RING_1	Prokaryotic RING finger family 1	1.1E-05	16	29.10	284	316
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	1.5E-06	18	27.30	285	327
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	4.5E-10	30	27.00	285	334
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	1.3E-07	22	21.40	285	331
zf-RING_2	Ring finger domain	2.3E-15	47	27.30	287	328
RINGv	RING-variant domain	0.00011	13	21.60	288	328
PHD	PHD-finger	0.00074	10	27.90	288	329
zf-RING_UBOX	RING-type zinc-finger	2.3E-07	21	25.20	288	325
Prok-RING_4	Prokaryotic RING finger family 4	1.4E-06	19	27.00	288	335
zf-RING_5	zinc-RING finger domain	2.2E-12	37	27.90	288	329
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1.1E-10	32	27.00	288	328
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	2.9E-10	30	21.00	288	328
zf-RING_11	RING-like zinc finger	2.3E-10	31	27.00	288	315
zinc_ribbon_16	Zinc-ribbon like family	0.00016	12	27.00	304	332
FANCL_C	FANCL C-terminal domain	0.026	5	20.70	305	323
zf-C3H2C3	Zinc-finger	3E-05	15	27.00	306	328
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	0.0015	9	20.70	306	329
Prok-RING_1	Prokaryotic RING finger family 1	0.085	3	29.10	321	333
UPF0547	Uncharacterised protein family UPF0547	0.00049	11	27.10	323	335