c2pfam

AT3G20190.1 :

Domain Description Evalue Bits GA Start End
Sigma_reg_N Sigma factor regulator N-terminal 0.51 1 26.30 19 37
Baculo_11_kDa Baculovirus 11 kDa family 0.4 1 20.50 20 38
LRRNT_2 Leucine rich repeat N-terminal domain 5.3E-13 40 20.70 50 91
LRR_9 Leucine-rich repeat 0.0045 7 30.50 106 130
LRR_4 Leucine Rich repeats (2 copies) 0.026 6 27.00 111 131
LRR_4 Leucine Rich repeats (2 copies) 3.6E-05 15 27.00 119 155
LRR_6 Leucine Rich repeat 1 1 23.40 120 132
LRR_2 Leucine Rich Repeat 0.0011 10 20.90 143 157
LRR_8 Leucine rich repeat 6.2E-14 42 27.00 144 203
LRR_4 Leucine Rich repeats (2 copies) 2.2E-06 19 27.00 144 183
LRR_6 Leucine Rich repeat 0.17 3 23.40 144 157
LRR_1 Leucine Rich Repeat 0.0015 10 20.60 144 161
LRR_9 Leucine-rich repeat 0.075 3 30.50 160 201
LRR_4 Leucine Rich repeats (2 copies) 0.00022 12 27.00 168 201
LRR_1 Leucine Rich Repeat 0.99 1 20.60 168 187
LRR_6 Leucine Rich repeat 0.26 2 23.40 191 206
LRR_4 Leucine Rich repeats (2 copies) 0.14 3 27.00 191 216
LRR_1 Leucine Rich Repeat 0.47 2 20.60 220 235
Claudin_2 PMP-22/EMP/MP20/Claudin tight junction 0.00024 11 29.10 252 297
TMEM51 Transmembrane protein 51 3.5E-08 24 25.50 258 342
LRR19-TM Leucine-rich repeat family 19 TM domain 0.00057 11 27.00 269 332
Tetraspanin Tetraspanin family 2.9E-05 14 32.10 271 309
Ninjurin Ninjurin 4.8E-05 14 25.00 272 311
TMEM154 TMEM154 protein family 9.8E-06 16 30.30 272 328
DUF872 Eukaryotic protein of unknown function (DUF872) 0.00037 11 22.10 273 305
Baculo_11_kDa Baculovirus 11 kDa family 0.0014 9 20.50 274 306
Sigma_reg_N Sigma factor regulator N-terminal 0.0046 8 26.30 274 301
DUF3899 Domain of unknown function (DUF3899) 0.001 10 23.40 277 299
DUF4834 Domain of unknown function (DUF4834) 6E-06 18 27.80 278 360
EphA2_TM Ephrin type-A receptor 2 transmembrane domain 0.00052 12 28.90 283 315
RCR Chitin synthesis regulation, resistance to Congo red 0.00021 13 25.10 284 345
Pkinase Protein kinase domain 6E-29 92 20.40 375 641
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 1.8E-29 93 23.10 376 642

679

Sigma_reg_N
Baculo_11_kDa
LRRNT_2
LRR_9
LRR_4
LRR_4
LRR_6
LRR_2
LRR_8
LRR_4
LRR_6
LRR_1
LRR_9
LRR_4
LRR_1
LRR_6
LRR_4
LRR_1
Claudin_2
TMEM51
LRR19-TM
Tetraspanin
Ninjurin
TMEM154
DUF872
Baculo_11_kDa
Sigma_reg_N
DUF3899
DUF4834
EphA2_TM
RCR
Pkinase
PK_Tyr_Ser-Thr

References:

DUF4834

Claudin_2

Baculo_11_kDa

DUF3899

LRR_2
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRRNT_2
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.

LRR_9

LRR_8

LRR_6

LRR_4

RCR
15590673 A novel endoplasmic reticulum membrane protein Rcr1 regulates chitin deposition in the cell wall of Saccharomyces cerevisiae. J Biol Chem. 2005;280:8275-8284.
17213653 Peculiar protein-protein interactions of the novel endoplasmic reticulum membrane protein Rcr1 and ubiquitin ligase Rsp5. Biosci Biotechnol Biochem. 2007;71:249-252.

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

Sigma_reg_N

Tetraspanin

LRR19-TM

DUF872

Ninjurin
8780658 Ninjurin, a novel adhesion molecule, is induced by nerve injury and promotes axonal growth. Neuron 1996;17:353-361.

PK_Tyr_Ser-Thr

TMEM154

TMEM51

EphA2_TM

Domain	Description	Evalue	Bits	GA	Start	End
Sigma_reg_N	Sigma factor regulator N-terminal	0.51	1	26.30	19	37
Baculo_11_kDa	Baculovirus 11 kDa family	0.4	1	20.50	20	38
LRRNT_2	Leucine rich repeat N-terminal domain	5.3E-13	40	20.70	50	91
LRR_9	Leucine-rich repeat	0.0045	7	30.50	106	130
LRR_4	Leucine Rich repeats (2 copies)	0.026	6	27.00	111	131
LRR_4	Leucine Rich repeats (2 copies)	3.6E-05	15	27.00	119	155
LRR_6	Leucine Rich repeat	1	1	23.40	120	132
LRR_2	Leucine Rich Repeat	0.0011	10	20.90	143	157
LRR_8	Leucine rich repeat	6.2E-14	42	27.00	144	203
LRR_4	Leucine Rich repeats (2 copies)	2.2E-06	19	27.00	144	183
LRR_6	Leucine Rich repeat	0.17	3	23.40	144	157
LRR_1	Leucine Rich Repeat	0.0015	10	20.60	144	161
LRR_9	Leucine-rich repeat	0.075	3	30.50	160	201
LRR_4	Leucine Rich repeats (2 copies)	0.00022	12	27.00	168	201
LRR_1	Leucine Rich Repeat	0.99	1	20.60	168	187
LRR_6	Leucine Rich repeat	0.26	2	23.40	191	206
LRR_4	Leucine Rich repeats (2 copies)	0.14	3	27.00	191	216
LRR_1	Leucine Rich Repeat	0.47	2	20.60	220	235
Claudin_2	PMP-22/EMP/MP20/Claudin tight junction	0.00024	11	29.10	252	297
TMEM51	Transmembrane protein 51	3.5E-08	24	25.50	258	342
LRR19-TM	Leucine-rich repeat family 19 TM domain	0.00057	11	27.00	269	332
Tetraspanin	Tetraspanin family	2.9E-05	14	32.10	271	309
Ninjurin	Ninjurin	4.8E-05	14	25.00	272	311
TMEM154	TMEM154 protein family	9.8E-06	16	30.30	272	328
DUF872	Eukaryotic protein of unknown function (DUF872)	0.00037	11	22.10	273	305
Baculo_11_kDa	Baculovirus 11 kDa family	0.0014	9	20.50	274	306
Sigma_reg_N	Sigma factor regulator N-terminal	0.0046	8	26.30	274	301
DUF3899	Domain of unknown function (DUF3899)	0.001	10	23.40	277	299
DUF4834	Domain of unknown function (DUF4834)	6E-06	18	27.80	278	360
EphA2_TM	Ephrin type-A receptor 2 transmembrane domain	0.00052	12	28.90	283	315
RCR	Chitin synthesis regulation, resistance to Congo red	0.00021	13	25.10	284	345
Pkinase	Protein kinase domain	6E-29	92	20.40	375	641
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	1.8E-29	93	23.10	376	642