c2pfam

AT3G20250.1 :

Domain Description Evalue Bits GA Start End
Ribosomal_S7 Ribosomal protein S7p/S5e 0.044 2 20.10 73 104
DUF445 Protein of unknown function (DUF445) 0.23 0 33.80 148 241
PUF Pumilio-family RNA binding repeat 2.1E-16 48 21.20 584 618
LOB Lateral organ boundaries (LOB) domain 0.0013 8 24.20 611 654
PUF Pumilio-family RNA binding repeat 3E-12 35 21.20 623 653
DUF2524 Protein of unknown function (DUF2524) 0.15 1 25.00 634 651
Ribosomal_S7 Ribosomal protein S7p/S5e 0.19 0 20.10 643 691
PUF Pumilio-family RNA binding repeat 3.6E-13 38 21.20 656 689
Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding domain 0.011 5 25.10 662 711
LOB Lateral organ boundaries (LOB) domain 0.94 -1 24.20 663 687
DUF445 Protein of unknown function (DUF445) 4.1E-05 12 33.80 691 874
PUF Pumilio-family RNA binding repeat 3.8E-07 19 21.20 698 712
PUF Pumilio-family RNA binding repeat 2.2E-19 58 21.20 728 763
Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding domain 0.00071 9 25.10 741 821
LOB Lateral organ boundaries (LOB) domain 0.018 5 24.20 748 798
PUF Pumilio-family RNA binding repeat 3.3E-11 32 21.20 767 798
Ribosomal_S7 Ribosomal protein S7p/S5e 0.0045 5 20.10 788 826
PUF Pumilio-family RNA binding repeat 1.8E-14 42 21.20 801 835
DUF2524 Protein of unknown function (DUF2524) 9.1E-05 12 25.00 805 884
PUF Pumilio-family RNA binding repeat 1.5E-10 29 21.20 843 874

913

Ribosomal_S7
DUF445
PUF
LOB
PUF
DUF2524
Ribosomal_S7
PUF
Sacchrp_dh_NADP
LOB
DUF445
PUF
PUF
Sacchrp_dh_NADP
LOB
PUF
Ribosomal_S7
PUF
DUF2524
PUF

References:

Ribosomal_S7
9331418 The structure of ribosomal protein S7 at 1.9 A resolution reveals a beta-hairpin motif that binds double-stranded nucleic acids. Structure 1997;5:1187-1198.

LOB

DUF445

DUF2524

Sacchrp_dh_NADP

PUF
9393998 A conserved RNA-binding protein that regulates sexual fates in the C. elegans hermaphrodite germ line. Nature 1997;390:477-484.
9404893 The Pumilio protein binds RNA through a conserved domain that defines a new class of RNA-binding proteins. RNA 1997;3:1421-1433.
11336677 Structure of Pumilio reveals similarity between RNA and peptide binding motifs. Cell 2001;105:281-289.
11336708 Crystal structure of a Pumilio homology domain. Mol Cell 2001;7:855-865.

Domain	Description	Evalue	Bits	GA	Start	End
Ribosomal_S7	Ribosomal protein S7p/S5e	0.044	2	20.10	73	104
DUF445	Protein of unknown function (DUF445)	0.23	0	33.80	148	241
PUF	Pumilio-family RNA binding repeat	2.1E-16	48	21.20	584	618
LOB	Lateral organ boundaries (LOB) domain	0.0013	8	24.20	611	654
PUF	Pumilio-family RNA binding repeat	3E-12	35	21.20	623	653
DUF2524	Protein of unknown function (DUF2524)	0.15	1	25.00	634	651
Ribosomal_S7	Ribosomal protein S7p/S5e	0.19	0	20.10	643	691
PUF	Pumilio-family RNA binding repeat	3.6E-13	38	21.20	656	689
Sacchrp_dh_NADP	Saccharopine dehydrogenase NADP binding domain	0.011	5	25.10	662	711
LOB	Lateral organ boundaries (LOB) domain	0.94	-1	24.20	663	687
DUF445	Protein of unknown function (DUF445)	4.1E-05	12	33.80	691	874
PUF	Pumilio-family RNA binding repeat	3.8E-07	19	21.20	698	712
PUF	Pumilio-family RNA binding repeat	2.2E-19	58	21.20	728	763
Sacchrp_dh_NADP	Saccharopine dehydrogenase NADP binding domain	0.00071	9	25.10	741	821
LOB	Lateral organ boundaries (LOB) domain	0.018	5	24.20	748	798
PUF	Pumilio-family RNA binding repeat	3.3E-11	32	21.20	767	798
Ribosomal_S7	Ribosomal protein S7p/S5e	0.0045	5	20.10	788	826
PUF	Pumilio-family RNA binding repeat	1.8E-14	42	21.20	801	835
DUF2524	Protein of unknown function (DUF2524)	9.1E-05	12	25.00	805	884
PUF	Pumilio-family RNA binding repeat	1.5E-10	29	21.20	843	874