c2pfam

AT3G20730.1 :

Domain Description Evalue Bits GA Start End
RNPP_C RNPP family C-terminal domain 0.017 5 26.50 23 76
PPR_1 PPR repeat 0.91 -1 23.80 38 47
RPN7 26S proteasome subunit RPN7 0.017 5 25.30 48 77
TPR_14 Tetratricopeptide repeat 0.0012 10 23.50 50 77
AEP1 ATPase expression protein 1 0.0015 8 27.00 50 83
TPR_19 Tetratricopeptide repeat 0.0004 11 25.00 53 78
TPR_16 Tetratricopeptide repeat 0.0055 8 32.70 53 80
PPR_1 PPR repeat 0.004 7 23.80 53 73
PPR_3 Pentatricopeptide repeat domain 0.097 3 25.00 54 77
PPR PPR repeat 2.2E-05 15 25.00 54 78
PPR_2 PPR repeat family 6.1E-05 13 30.00 54 78
TPR_7 Tetratricopeptide repeat 0.51 1 27.90 56 73
TPR_1 Tetratricopeptide repeat 0.074 3 20.40 57 73
TPR_2 Tetratricopeptide repeat 0.0052 7 22.40 57 73
TPR_12 Tetratricopeptide repeat 0.81 0 30.10 57 73
PPR_1 PPR repeat 6.4E-05 13 23.80 76 105
PPR_2 PPR repeat family 2.7E-13 40 30.00 77 124
PPR PPR repeat 2.3E-09 27 25.00 80 109
PPR_long Pentacotripeptide-repeat region of PRORP 0.00038 10 27.00 96 178
PPR_3 Pentatricopeptide repeat domain 2.3E-07 21 25.00 101 159
PPR_1 PPR repeat 0.79 0 23.80 110 122
PPR PPR repeat 0.015 6 25.00 115 142
AEP1 ATPase expression protein 1 0.26 0 27.00 150 190
PPR PPR repeat 9E-07 19 25.00 153 179
PPR_3 Pentatricopeptide repeat domain 0.018 5 25.00 153 179
TPR_14 Tetratricopeptide repeat 0.3 2 23.50 153 173
RPN7 26S proteasome subunit RPN7 0.13 2 25.30 154 189
PPR_1 PPR repeat 0.029 4 23.80 154 176
PPR_2 PPR repeat family 0.00013 12 30.00 154 179
TPR_7 Tetratricopeptide repeat 0.84 0 27.90 157 168
PPR_1 PPR repeat 0.0078 6 23.80 178 190
PPR_2 PPR repeat family 6.3E-10 29 30.00 179 224
PPR PPR repeat 6.3E-07 20 25.00 181 210
PPR_3 Pentatricopeptide repeat domain 0.0056 7 25.00 202 236
PPR_1 PPR repeat 0.026 4 23.80 210 222
RPN7 26S proteasome subunit RPN7 0.38 0 25.30 254 275
PPR_1 PPR repeat 0.2 2 23.80 255 272
PPR PPR repeat 0.0058 7 25.00 255 277
PPR_2 PPR repeat family 0.036 4 30.00 256 279
PPR_2 PPR repeat family 1.6E-08 25 30.00 280 327
PPR_3 Pentatricopeptide repeat domain 0.0053 7 25.00 280 308
PPR PPR repeat 0.0022 9 25.00 283 311
PPR_long Pentacotripeptide-repeat region of PRORP 0.00026 10 27.00 291 329
PPR_1 PPR repeat 0.43 1 23.80 298 308
AEP1 ATPase expression protein 1 0.02 4 27.00 340 394
PPR_3 Pentatricopeptide repeat domain 3.7E-05 14 25.00 346 384
RNPP_C RNPP family C-terminal domain 0.039 3 26.50 351 379
PPR_long Pentacotripeptide-repeat region of PRORP 1.6E-07 21 27.00 352 441
PPR_2 PPR repeat family 2.4E-07 21 30.00 356 384
PPR PPR repeat 6.5E-09 26 25.00 357 384
PPR_1 PPR repeat 3E-06 17 23.80 357 380
RPN7 26S proteasome subunit RPN7 0.016 5 25.30 358 385
TPR_19 Tetratricopeptide repeat 0.29 2 25.00 359 383
TPR_16 Tetratricopeptide repeat 0.66 1 32.70 359 379
TPR_7 Tetratricopeptide repeat 0.55 1 27.90 361 378
TPR_1 Tetratricopeptide repeat 0.077 3 20.40 362 378
TPR_2 Tetratricopeptide repeat 0.067 4 22.40 362 379
PPR_long Pentacotripeptide-repeat region of PRORP 4.8E-09 26 27.00 368 493
PPR_2 PPR repeat family 9.7E-16 48 30.00 382 430
PPR_1 PPR repeat 4.7E-08 23 23.80 383 411
PPR_3 Pentatricopeptide repeat domain 4.6E-09 26 25.00 383 429
TPR_1 Tetratricopeptide repeat 0.00094 9 20.40 385 409
TPR_14 Tetratricopeptide repeat 0.011 7 23.50 386 410
PPR PPR repeat 2.2E-11 34 25.00 386 414
RNPP_C RNPP family C-terminal domain 0.98 -1 26.50 388 410
RPN7 26S proteasome subunit RPN7 0.059 3 25.30 392 416
TPR_12 Tetratricopeptide repeat 0.083 3 30.10 394 409
TPR_2 Tetratricopeptide repeat 0.011 6 22.40 395 409
TPR_16 Tetratricopeptide repeat 0.22 2 32.70 396 411
TPR_7 Tetratricopeptide repeat 0.043 4 27.90 398 409
TPR_19 Tetratricopeptide repeat 0.99 0 25.00 398 411
PPR_1 PPR repeat 0.12 2 23.80 415 428
PPR PPR repeat 6.7E-05 13 25.00 420 448
PPR_2 PPR repeat family 0.0031 8 30.00 424 448
PPR PPR repeat 0.0014 9 25.00 459 478
PPR_1 PPR repeat 0.0013 9 23.80 459 479
PPR_2 PPR repeat family 0.032 5 30.00 460 498
PPR PPR repeat 0.061 4 25.00 490 506
TPR_16 Tetratricopeptide repeat 0.18 3 32.70 501 543
TPR_19 Tetratricopeptide repeat 0.18 3 25.00 513 545
PPR_3 Pentatricopeptide repeat domain 0.028 5 25.00 524 553
PPR PPR repeat 0.0016 9 25.00 526 553
TPR_2 Tetratricopeptide repeat 0.09 3 22.40 526 543
TPR_7 Tetratricopeptide repeat 0.016 6 27.90 526 546
TPR_1 Tetratricopeptide repeat 0.042 4 20.40 526 543
TPR_12 Tetratricopeptide repeat 0.017 6 30.10 526 544
TPR_14 Tetratricopeptide repeat 0.73 1 23.50 529 543
PPR_2 PPR repeat family 0.24 2 30.00 531 553

565

RNPP_C
PPR_1
RPN7
TPR_14
AEP1
TPR_19
TPR_16
PPR_1
PPR_3
PPR
PPR_2
TPR_7
TPR_1
TPR_2
TPR_12
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
AEP1
PPR
PPR_3
TPR_14
RPN7
PPR_1
PPR_2
TPR_7
PPR_1
PPR_2
PPR
PPR_3
PPR_1
RPN7
PPR_1
PPR
PPR_2
PPR_2
PPR_3
PPR
PPR_long
PPR_1
AEP1
PPR_3
RNPP_C
PPR_long
PPR_2
PPR
PPR_1
RPN7
TPR_19
TPR_16
TPR_7
TPR_1
TPR_2
PPR_long
PPR_2
PPR_1
PPR_3
TPR_1
TPR_14
PPR
RNPP_C
RPN7
TPR_12
TPR_2
TPR_16
TPR_7
TPR_19
PPR_1
PPR
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_16
TPR_19
PPR_3
PPR
TPR_2
TPR_7
TPR_1
TPR_12
TPR_14
PPR_2

References:

TPR_7

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_14

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

TPR_16

PPR_3

PPR_2

PPR_1

AEP1

PPR_long

RNPP_C

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_12

Domain	Description	Evalue	Bits	GA	Start	End
RNPP_C	RNPP family C-terminal domain	0.017	5	26.50	23	76
PPR_1	PPR repeat	0.91	-1	23.80	38	47
RPN7	26S proteasome subunit RPN7	0.017	5	25.30	48	77
TPR_14	Tetratricopeptide repeat	0.0012	10	23.50	50	77
AEP1	ATPase expression protein 1	0.0015	8	27.00	50	83
TPR_19	Tetratricopeptide repeat	0.0004	11	25.00	53	78
TPR_16	Tetratricopeptide repeat	0.0055	8	32.70	53	80
PPR_1	PPR repeat	0.004	7	23.80	53	73
PPR_3	Pentatricopeptide repeat domain	0.097	3	25.00	54	77
PPR	PPR repeat	2.2E-05	15	25.00	54	78
PPR_2	PPR repeat family	6.1E-05	13	30.00	54	78
TPR_7	Tetratricopeptide repeat	0.51	1	27.90	56	73
TPR_1	Tetratricopeptide repeat	0.074	3	20.40	57	73
TPR_2	Tetratricopeptide repeat	0.0052	7	22.40	57	73
TPR_12	Tetratricopeptide repeat	0.81	0	30.10	57	73
PPR_1	PPR repeat	6.4E-05	13	23.80	76	105
PPR_2	PPR repeat family	2.7E-13	40	30.00	77	124
PPR	PPR repeat	2.3E-09	27	25.00	80	109
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00038	10	27.00	96	178
PPR_3	Pentatricopeptide repeat domain	2.3E-07	21	25.00	101	159
PPR_1	PPR repeat	0.79	0	23.80	110	122
PPR	PPR repeat	0.015	6	25.00	115	142
AEP1	ATPase expression protein 1	0.26	0	27.00	150	190
PPR	PPR repeat	9E-07	19	25.00	153	179
PPR_3	Pentatricopeptide repeat domain	0.018	5	25.00	153	179
TPR_14	Tetratricopeptide repeat	0.3	2	23.50	153	173
RPN7	26S proteasome subunit RPN7	0.13	2	25.30	154	189
PPR_1	PPR repeat	0.029	4	23.80	154	176
PPR_2	PPR repeat family	0.00013	12	30.00	154	179
TPR_7	Tetratricopeptide repeat	0.84	0	27.90	157	168
PPR_1	PPR repeat	0.0078	6	23.80	178	190
PPR_2	PPR repeat family	6.3E-10	29	30.00	179	224
PPR	PPR repeat	6.3E-07	20	25.00	181	210
PPR_3	Pentatricopeptide repeat domain	0.0056	7	25.00	202	236
PPR_1	PPR repeat	0.026	4	23.80	210	222
RPN7	26S proteasome subunit RPN7	0.38	0	25.30	254	275
PPR_1	PPR repeat	0.2	2	23.80	255	272
PPR	PPR repeat	0.0058	7	25.00	255	277
PPR_2	PPR repeat family	0.036	4	30.00	256	279
PPR_2	PPR repeat family	1.6E-08	25	30.00	280	327
PPR_3	Pentatricopeptide repeat domain	0.0053	7	25.00	280	308
PPR	PPR repeat	0.0022	9	25.00	283	311
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00026	10	27.00	291	329
PPR_1	PPR repeat	0.43	1	23.80	298	308
AEP1	ATPase expression protein 1	0.02	4	27.00	340	394
PPR_3	Pentatricopeptide repeat domain	3.7E-05	14	25.00	346	384
RNPP_C	RNPP family C-terminal domain	0.039	3	26.50	351	379
PPR_long	Pentacotripeptide-repeat region of PRORP	1.6E-07	21	27.00	352	441
PPR_2	PPR repeat family	2.4E-07	21	30.00	356	384
PPR	PPR repeat	6.5E-09	26	25.00	357	384
PPR_1	PPR repeat	3E-06	17	23.80	357	380
RPN7	26S proteasome subunit RPN7	0.016	5	25.30	358	385
TPR_19	Tetratricopeptide repeat	0.29	2	25.00	359	383
TPR_16	Tetratricopeptide repeat	0.66	1	32.70	359	379
TPR_7	Tetratricopeptide repeat	0.55	1	27.90	361	378
TPR_1	Tetratricopeptide repeat	0.077	3	20.40	362	378
TPR_2	Tetratricopeptide repeat	0.067	4	22.40	362	379
PPR_long	Pentacotripeptide-repeat region of PRORP	4.8E-09	26	27.00	368	493
PPR_2	PPR repeat family	9.7E-16	48	30.00	382	430
PPR_1	PPR repeat	4.7E-08	23	23.80	383	411
PPR_3	Pentatricopeptide repeat domain	4.6E-09	26	25.00	383	429
TPR_1	Tetratricopeptide repeat	0.00094	9	20.40	385	409
TPR_14	Tetratricopeptide repeat	0.011	7	23.50	386	410
PPR	PPR repeat	2.2E-11	34	25.00	386	414
RNPP_C	RNPP family C-terminal domain	0.98	-1	26.50	388	410
RPN7	26S proteasome subunit RPN7	0.059	3	25.30	392	416
TPR_12	Tetratricopeptide repeat	0.083	3	30.10	394	409
TPR_2	Tetratricopeptide repeat	0.011	6	22.40	395	409
TPR_16	Tetratricopeptide repeat	0.22	2	32.70	396	411
TPR_7	Tetratricopeptide repeat	0.043	4	27.90	398	409
TPR_19	Tetratricopeptide repeat	0.99	0	25.00	398	411
PPR_1	PPR repeat	0.12	2	23.80	415	428
PPR	PPR repeat	6.7E-05	13	25.00	420	448
PPR_2	PPR repeat family	0.0031	8	30.00	424	448
PPR	PPR repeat	0.0014	9	25.00	459	478
PPR_1	PPR repeat	0.0013	9	23.80	459	479
PPR_2	PPR repeat family	0.032	5	30.00	460	498
PPR	PPR repeat	0.061	4	25.00	490	506
TPR_16	Tetratricopeptide repeat	0.18	3	32.70	501	543
TPR_19	Tetratricopeptide repeat	0.18	3	25.00	513	545
PPR_3	Pentatricopeptide repeat domain	0.028	5	25.00	524	553
PPR	PPR repeat	0.0016	9	25.00	526	553
TPR_2	Tetratricopeptide repeat	0.09	3	22.40	526	543
TPR_7	Tetratricopeptide repeat	0.016	6	27.90	526	546
TPR_1	Tetratricopeptide repeat	0.042	4	20.40	526	543
TPR_12	Tetratricopeptide repeat	0.017	6	30.10	526	544
TPR_14	Tetratricopeptide repeat	0.73	1	23.50	529	543
PPR_2	PPR repeat family	0.24	2	30.00	531	553