c2pfam

AT3G21540.1 :

Domain Description Evalue Bits GA Start End
WD40 WD domain, G-beta repeat 1.3E-05 16 21.00 51 92
Nup160 Nucleoporin Nup120/160 0.0065 5 19.20 65 98
BBS2_Mid Ciliary BBSome complex subunit 2, middle region 0.015 5 27.00 65 125
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.00017 12 22.90 75 106
PALB2_WD40 Partner and localizer of BRCA2 WD40 domain 0.00084 8 27.00 77 133
eIF2A Eukaryotic translation initiation factor eIF2A 0.15 2 20.50 78 124
Rhamnogal_lyase Rhamnogalacturonate lyase family 8.7E-05 12 19.90 93 137
WD40 WD domain, G-beta repeat 7.3E-07 20 21.00 98 134
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 8.4E-05 13 22.90 104 149
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.12 1 29.50 109 182
WD40_like WD40-like domain 0.11 1 40.00 111 167
Nup160 Nucleoporin Nup120/160 0.76 -2 19.20 123 138
WD40 WD domain, G-beta repeat 1.1E-07 22 21.00 142 176
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.033 4 22.90 146 191
Nup160 Nucleoporin Nup120/160 0.00034 9 19.20 163 189
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.19 2 22.90 169 220
eIF2A Eukaryotic translation initiation factor eIF2A 0.00016 11 20.50 172 236
PALB2_WD40 Partner and localizer of BRCA2 WD40 domain 0.069 2 27.00 173 196
WD40 WD domain, G-beta repeat 8.4E-08 23 21.00 181 217
Nucleoporin_N Nup133 N terminal like 0.0048 5 23.70 186 241
WD40_like WD40-like domain 0.014 4 40.00 191 221
BBS2_Mid Ciliary BBSome complex subunit 2, middle region 0.13 2 27.00 197 221
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.0042 7 22.90 254 294
Med19 Mediator of RNA pol II transcription subunit 19 0.28 1 25.00 297 319
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.0024 8 22.90 375 448
WD40_like WD40-like domain 0.0098 5 40.00 395 545
WD40 WD domain, G-beta repeat 6.6E-05 14 21.00 402 433
Nup160 Nucleoporin Nup120/160 0.00024 9 19.20 412 445
PALB2_WD40 Partner and localizer of BRCA2 WD40 domain 0.00071 8 27.00 417 449
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.0075 5 29.50 423 444
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.67 0 22.90 461 488
WD40 WD domain, G-beta repeat 0.0011 10 21.00 482 514
Nucleoporin_N Nup133 N terminal like 0.15 0 23.70 500 536
Nup160 Nucleoporin Nup120/160 0.26 -1 19.20 502 519
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.0034 6 29.50 527 568
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.02 5 22.90 535 589
WD40 WD domain, G-beta repeat 0.018 6 21.00 541 567
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.0026 8 22.90 550 628
BBS2_Mid Ciliary BBSome complex subunit 2, middle region 0.19 2 27.00 553 601
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.13 1 29.50 576 611
WD40 WD domain, G-beta repeat 1.7E-08 25 21.00 577 609
WD40_like WD40-like domain 1.2E-07 21 40.00 585 640
Nucleoporin_N Nup133 N terminal like 0.00082 8 23.70 586 704
BBS2_Mid Ciliary BBSome complex subunit 2, middle region 0.55 0 27.00 588 609
Nup160 Nucleoporin Nup120/160 0.16 0 19.20 590 620
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.098 3 22.90 595 672
WD40 WD domain, G-beta repeat 0.0015 9 21.00 616 652
Nup160 Nucleoporin Nup120/160 0.88 -2 19.20 631 655
WD40 WD domain, G-beta repeat 5E-09 27 21.00 657 694
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.68 0 22.90 663 691
Utp12 Dip2/Utp12 Family 8.8E-19 58 26.00 796 897
Med19 Mediator of RNA pol II transcription subunit 19 0.00067 9 25.00 887 946

955

WD40
Nup160
BBS2_Mid
ANAPC4_WD40
PALB2_WD40
eIF2A
Rhamnogal_lyase
WD40
ANAPC4_WD40
Ge1_WD40
WD40_like
Nup160
WD40
ANAPC4_WD40
Nup160
ANAPC4_WD40
eIF2A
PALB2_WD40
WD40
Nucleoporin_N
WD40_like
BBS2_Mid
ANAPC4_WD40
Med19
ANAPC4_WD40
WD40_like
WD40
Nup160
PALB2_WD40
Ge1_WD40
ANAPC4_WD40
WD40
Nucleoporin_N
Nup160
Ge1_WD40
ANAPC4_WD40
WD40
ANAPC4_WD40
BBS2_Mid
Ge1_WD40
WD40
WD40_like
Nucleoporin_N
BBS2_Mid
Nup160
ANAPC4_WD40
WD40
Nup160
WD40
ANAPC4_WD40
Utp12
Med19

References:

eIF2A
12133843 Characterization of mammalian eIF2A and identification of the yeast homolog. J Biol Chem. 2002;277:37079-37087.

Rhamnogal_lyase
12591882 Rhamnogalacturonate lyase RhiE is secreted by the out system in Erwinia chrysanthemi. J Bacteriol 2003;185:1642-1649.

ANAPC4_WD40

Utp12
12068309 A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 2002;0:0-0.

BBS2_Mid

Ge1_WD40

Nucleoporin_N
15557116 Structural and functional analysis of Nup133 domains reveals modular building blocks of the nuclear pore complex. J Cell Biol. 2004;167:591-597.

Med19
12584197 Identification of mammalian Mediator subunits with similarities to yeast Mediator subunits Srb5, Srb6, Med11, and Rox3. J Biol Chem 2003;278:15123-15127.

WD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

WD40_like

PALB2_WD40

Nup160
8557736 Nup120p: a yeast nucleoporin required for NPC distribution and mRNA transport. J Cell Biol. 1995;131:1659-1675.
11684705 Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. J Cell Biol 2001;155:339-354.
17360435 Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc Natl Acad Sci U S A. 2007;104:3811-3816.

Domain	Description	Evalue	Bits	GA	Start	End
WD40	WD domain, G-beta repeat	1.3E-05	16	21.00	51	92
Nup160	Nucleoporin Nup120/160	0.0065	5	19.20	65	98
BBS2_Mid	Ciliary BBSome complex subunit 2, middle region	0.015	5	27.00	65	125
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.00017	12	22.90	75	106
PALB2_WD40	Partner and localizer of BRCA2 WD40 domain	0.00084	8	27.00	77	133
eIF2A	Eukaryotic translation initiation factor eIF2A	0.15	2	20.50	78	124
Rhamnogal_lyase	Rhamnogalacturonate lyase family	8.7E-05	12	19.90	93	137
WD40	WD domain, G-beta repeat	7.3E-07	20	21.00	98	134
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	8.4E-05	13	22.90	104	149
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.12	1	29.50	109	182
WD40_like	WD40-like domain	0.11	1	40.00	111	167
Nup160	Nucleoporin Nup120/160	0.76	-2	19.20	123	138
WD40	WD domain, G-beta repeat	1.1E-07	22	21.00	142	176
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.033	4	22.90	146	191
Nup160	Nucleoporin Nup120/160	0.00034	9	19.20	163	189
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.19	2	22.90	169	220
eIF2A	Eukaryotic translation initiation factor eIF2A	0.00016	11	20.50	172	236
PALB2_WD40	Partner and localizer of BRCA2 WD40 domain	0.069	2	27.00	173	196
WD40	WD domain, G-beta repeat	8.4E-08	23	21.00	181	217
Nucleoporin_N	Nup133 N terminal like	0.0048	5	23.70	186	241
WD40_like	WD40-like domain	0.014	4	40.00	191	221
BBS2_Mid	Ciliary BBSome complex subunit 2, middle region	0.13	2	27.00	197	221
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.0042	7	22.90	254	294
Med19	Mediator of RNA pol II transcription subunit 19	0.28	1	25.00	297	319
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.0024	8	22.90	375	448
WD40_like	WD40-like domain	0.0098	5	40.00	395	545
WD40	WD domain, G-beta repeat	6.6E-05	14	21.00	402	433
Nup160	Nucleoporin Nup120/160	0.00024	9	19.20	412	445
PALB2_WD40	Partner and localizer of BRCA2 WD40 domain	0.00071	8	27.00	417	449
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.0075	5	29.50	423	444
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.67	0	22.90	461	488
WD40	WD domain, G-beta repeat	0.0011	10	21.00	482	514
Nucleoporin_N	Nup133 N terminal like	0.15	0	23.70	500	536
Nup160	Nucleoporin Nup120/160	0.26	-1	19.20	502	519
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.0034	6	29.50	527	568
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.02	5	22.90	535	589
WD40	WD domain, G-beta repeat	0.018	6	21.00	541	567
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.0026	8	22.90	550	628
BBS2_Mid	Ciliary BBSome complex subunit 2, middle region	0.19	2	27.00	553	601
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.13	1	29.50	576	611
WD40	WD domain, G-beta repeat	1.7E-08	25	21.00	577	609
WD40_like	WD40-like domain	1.2E-07	21	40.00	585	640
Nucleoporin_N	Nup133 N terminal like	0.00082	8	23.70	586	704
BBS2_Mid	Ciliary BBSome complex subunit 2, middle region	0.55	0	27.00	588	609
Nup160	Nucleoporin Nup120/160	0.16	0	19.20	590	620
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.098	3	22.90	595	672
WD40	WD domain, G-beta repeat	0.0015	9	21.00	616	652
Nup160	Nucleoporin Nup120/160	0.88	-2	19.20	631	655
WD40	WD domain, G-beta repeat	5E-09	27	21.00	657	694
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.68	0	22.90	663	691
Utp12	Dip2/Utp12 Family	8.8E-19	58	26.00	796	897
Med19	Mediator of RNA pol II transcription subunit 19	0.00067	9	25.00	887	946