c2pfam

AT3G21810.1 :

Domain Description Evalue Bits GA Start End
zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1.2E-09 28 20.50 7 31
zf-CCCH_2 RNA-binding, Nab2-type zinc finger 0.00011 13 25.80 12 31
APG6_N Apg6 coiled-coil region 2.3E-05 15 45.00 133 233
DUF16 Protein of unknown function DUF16 0.0034 8 23.90 139 207
Csm1_N Csm1 N-terminal domain 5.7E-05 14 26.30 144 200
ADIP Afadin- and alpha -actinin-Binding 0.00032 11 29.10 145 240
Effector_1 Effector from type III secretion system 0.0002 11 23.80 146 195
Snapin_Pallidin Snapin/Pallidin 0.073 4 29.60 146 222
CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 0.0003 11 30.00 147 214
FlxA FlxA-like protein 0.00049 11 26.30 148 205
Crescentin Crescentin protein 1.6E-07 21 100.00 148 230
FPP Filament-like plant protein, long coiled-coil 0.00045 9 40.00 149 308
CENP-Q CENP-Q, a CENPA-CAD centromere complex subunit 0.001 10 28.50 151 227
DUF4407 Domain of unknown function (DUF4407) 0.00034 10 31.30 155 269
DUF4337 Domain of unknown function (DUF4337) 0.0008 10 27.00 155 233
Sec34 Sec34-like family 7.7E-05 13 25.00 173 233
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 3.5E-06 18 28.70 176 240
Occludin_ELL Occludin homology domain 0.63 1 25.30 178 196
Occludin_ELL Occludin homology domain 0.00011 13 25.30 178 240
Ribosomal_L30_N Ribosomal L30 N-terminal domain 0.018 6 23.90 184 229
Cir_Bir_Yir Plasmodium variant antigen protein Cir/Yir/Bir 0.00022 11 20.40 189 229
DUF16 Protein of unknown function DUF16 0.094 4 23.90 213 241
Ribosomal_L30_N Ribosomal L30 N-terminal domain 0.65 1 23.90 284 298

437

zf-CCCH
zf-CCCH_2
APG6_N
DUF16
Csm1_N
ADIP
Effector_1
Snapin_Pallidin
CENP-F_leu_zip
FlxA
Crescentin
FPP
CENP-Q
DUF4407
DUF4337
Sec34
TMF_TATA_bd
Occludin_ELL
Occludin_ELL
Ribosomal_L30_N
Cir_Bir_Yir
DUF16
Ribosomal_L30_N

References:

DUF4407

Effector_1

FlxA

ADIP
12446711 ADIP, a novel Afadin- and alpha-actinin-binding protein localized at cell-cell adherens junctions. J Biol Chem. 2003;278:4103-4111.
17486116 Gamma-tubulin complex-mediated anchoring of spindle microtubules to spindle-pole bodies requires Msd1 in fission yeast. Nat Cell Biol. 2007;9:646-653.

Ribosomal_L30_N
15112237 Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire. Bioessays 2004;26:567-581.

CENP-Q

Occludin_ELL
8276896 Occludin: a novel integral membrane protein localizing at tight junctions. J Cell Biol 1993;123:1777-1788.
8596958 An RNA polymerase II elongation factor encoded by the human ELL gene. Science 1996;271:1873-1876.
16081103 Structure of the conserved cytoplasmic C-terminal domain of occludin: identification of the ZO-1 binding surface. J Mol Biol. 2005;352:151-164.

FPP

APG6_N

Sec34
11703943 The Sec34/35 Golgi transport complex is related to the exocyst, defining a family of complexes involved in multiple steps of membrane traffic. Dev Cell 2001;1:527-537.

Cir_Bir_Yir

Crescentin

TMF_TATA_bd
1409643 Cloning and chromosomal mapping of a human immunodeficiency virus 1 "TATA" element modulatory factor. Proc Natl Acad Sci U S A. 1992;89:9372-9376.
15128430 TMF is a golgin that binds Rab6 and influences Golgi morphology. BMC Cell Biol. 2004;5:18.
18182439 Localization and domain characterization of Arabidopsis golgin candidates. J Exp Bot. 2007;58:4373-4386.

zf-CCCH_2

Snapin_Pallidin

DUF16
8948633 Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res 1996;24:4420-4449.
16522803 Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae. Protein Sci. 2006;15:921-928.

zf-CCCH

Csm1_N

CENP-F_leu_zip
7542657 CENP-F is a protein of the nuclear matrix that assembles onto kinetochores at late G2 and is rapidly degraded after mitosis. J Cell Biol. 1995;130:507-518.
14555653 LEK1 is a potential inhibitor of pocket protein-mediated cellular processes. J Biol Chem. 2004;279:664-676.

DUF4337

Domain	Description	Evalue	Bits	GA	Start	End
zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	1.2E-09	28	20.50	7	31
zf-CCCH_2	RNA-binding, Nab2-type zinc finger	0.00011	13	25.80	12	31
APG6_N	Apg6 coiled-coil region	2.3E-05	15	45.00	133	233
DUF16	Protein of unknown function DUF16	0.0034	8	23.90	139	207
Csm1_N	Csm1 N-terminal domain	5.7E-05	14	26.30	144	200
ADIP	Afadin- and alpha -actinin-Binding	0.00032	11	29.10	145	240
Effector_1	Effector from type III secretion system	0.0002	11	23.80	146	195
Snapin_Pallidin	Snapin/Pallidin	0.073	4	29.60	146	222
CENP-F_leu_zip	Leucine-rich repeats of kinetochore protein Cenp-F/LEK1	0.0003	11	30.00	147	214
FlxA	FlxA-like protein	0.00049	11	26.30	148	205
Crescentin	Crescentin protein	1.6E-07	21	100.00	148	230
FPP	Filament-like plant protein, long coiled-coil	0.00045	9	40.00	149	308
CENP-Q	CENP-Q, a CENPA-CAD centromere complex subunit	0.001	10	28.50	151	227
DUF4407	Domain of unknown function (DUF4407)	0.00034	10	31.30	155	269
DUF4337	Domain of unknown function (DUF4337)	0.0008	10	27.00	155	233
Sec34	Sec34-like family	7.7E-05	13	25.00	173	233
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	3.5E-06	18	28.70	176	240
Occludin_ELL	Occludin homology domain	0.63	1	25.30	178	196
Occludin_ELL	Occludin homology domain	0.00011	13	25.30	178	240
Ribosomal_L30_N	Ribosomal L30 N-terminal domain	0.018	6	23.90	184	229
Cir_Bir_Yir	Plasmodium variant antigen protein Cir/Yir/Bir	0.00022	11	20.40	189	229
DUF16	Protein of unknown function DUF16	0.094	4	23.90	213	241
Ribosomal_L30_N	Ribosomal L30 N-terminal domain	0.65	1	23.90	284	298