c2pfam

AT1G14580.1 :

Domain Description Evalue Bits GA Start End
zf-H2C2_2 Zinc-finger double domain 0.02 5 40.00 80 91
HypA Hydrogenase expression/synthesis hypA family 0.17 1 25.00 80 96
zf-C2H2_6 C2H2-type zinc finger 1.4E-06 18 25.00 82 104
zf-C2H2_4 C2H2-type zinc finger 9.1E-05 13 27.00 82 104
zf-C2H2 Zinc finger, C2H2 type 6.2E-06 16 20.80 83 104
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 1.1E-07 21 22.60 84 104
zf-met Zinc-finger of C2H2 type 7.7E-07 19 21.20 84 104
zf-H2C2_2 Zinc-finger double domain 0.55 0 40.00 96 111
zf-H2C2_2 Zinc-finger double domain 1.3E-05 15 40.00 146 167
DUF5472 Family of unknown function (DUF5472) 0.001 8 25.00 147 169
HypA Hydrogenase expression/synthesis hypA family 0.0025 7 25.00 155 190
zf-met Zinc-finger of C2H2 type 0.61 0 21.20 158 176
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.078 3 22.60 158 176
zf-C2H2_4 C2H2-type zinc finger 0.00094 9 27.00 158 179
zf-C2H2 Zinc finger, C2H2 type 0.00023 11 20.80 159 178
zf-C2H2_6 C2H2-type zinc finger 0.001 8 25.00 159 179
zf-C2H2 Zinc finger, C2H2 type 0.00084 9 20.80 181 203
zf-C2H2_4 C2H2-type zinc finger 0.021 5 27.00 185 203
zf-met Zinc-finger of C2H2 type 0.25 1 21.20 189 202
DUF5472 Family of unknown function (DUF5472) 0.21 1 25.00 212 230

467

zf-H2C2_2
HypA
zf-C2H2_6
zf-C2H2_4
zf-C2H2
zf-C2H2_jaz
zf-met
zf-H2C2_2
zf-H2C2_2
DUF5472
HypA
zf-met
zf-C2H2_jaz
zf-C2H2_4
zf-C2H2
zf-C2H2_6
zf-C2H2
zf-C2H2_4
zf-met
DUF5472

References:

zf-C2H2_6

zf-H2C2_2

HypA

zf-C2H2_4

zf-met

zf-C2H2
9171100 Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins. Nucleic Acids Res 1997;25:2464-2469.
12683994 Assessment by molecular dynamics simulations of the structural determinants of DNA-binding specificity for transcription factor Sp1. J Mol Biol 2003;328:9-32.

DUF5472

zf-C2H2_jaz
10488071 JAZ requires the double-stranded RNA-binding zinc finger motifs for nuclear localization. J Biol Chem. 1999;274:27399-27406.

Domain	Description	Evalue	Bits	GA	Start	End
zf-H2C2_2	Zinc-finger double domain	0.02	5	40.00	80	91
HypA	Hydrogenase expression/synthesis hypA family	0.17	1	25.00	80	96
zf-C2H2_6	C2H2-type zinc finger	1.4E-06	18	25.00	82	104
zf-C2H2_4	C2H2-type zinc finger	9.1E-05	13	27.00	82	104
zf-C2H2	Zinc finger, C2H2 type	6.2E-06	16	20.80	83	104
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	1.1E-07	21	22.60	84	104
zf-met	Zinc-finger of C2H2 type	7.7E-07	19	21.20	84	104
zf-H2C2_2	Zinc-finger double domain	0.55	0	40.00	96	111
zf-H2C2_2	Zinc-finger double domain	1.3E-05	15	40.00	146	167
DUF5472	Family of unknown function (DUF5472)	0.001	8	25.00	147	169
HypA	Hydrogenase expression/synthesis hypA family	0.0025	7	25.00	155	190
zf-met	Zinc-finger of C2H2 type	0.61	0	21.20	158	176
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	0.078	3	22.60	158	176
zf-C2H2_4	C2H2-type zinc finger	0.00094	9	27.00	158	179
zf-C2H2	Zinc finger, C2H2 type	0.00023	11	20.80	159	178
zf-C2H2_6	C2H2-type zinc finger	0.001	8	25.00	159	179
zf-C2H2	Zinc finger, C2H2 type	0.00084	9	20.80	181	203
zf-C2H2_4	C2H2-type zinc finger	0.021	5	27.00	185	203
zf-met	Zinc-finger of C2H2 type	0.25	1	21.20	189	202
DUF5472	Family of unknown function (DUF5472)	0.21	1	25.00	212	230