c2pfam

AT3G22690.1 :

Domain Description Evalue Bits GA Start End
RNPP_C RNPP family C-terminal domain 0.25 1 26.50 94 128
PPR_1 PPR repeat 9.9E-06 15 23.80 99 125
PPR_2 PPR repeat family 1.1E-10 31 30.00 100 145
PPR PPR repeat 4.6E-10 29 25.00 100 130
PPR_3 Pentatricopeptide repeat domain 0.0001 12 25.00 100 145
PPR_long Pentacotripeptide-repeat region of PRORP 0.16 1 27.00 101 183
RPN7 26S proteasome subunit RPN7 0.67 -1 25.30 104 132
PPR_1 PPR repeat 0.75 -1 23.80 129 137
RNPP_C RNPP family C-terminal domain 0.011 5 26.50 162 195
PPR_2 PPR repeat family 5.3E-06 16 30.00 168 200
PPR_3 Pentatricopeptide repeat domain 0.0014 9 25.00 170 198
RPN7 26S proteasome subunit RPN7 0.013 5 25.30 173 200
PPR_1 PPR repeat 5.1E-06 16 23.80 173 196
PPR PPR repeat 1.1E-06 19 25.00 173 200
TPR_19 Tetratricopeptide repeat 0.19 2 25.00 175 197
TPR_14 Tetratricopeptide repeat 0.0099 7 23.50 175 195
PPR_long Pentacotripeptide-repeat region of PRORP 3.5E-05 13 27.00 185 284
PPR_1 PPR repeat 2.7E-05 14 23.80 198 226
PPR_2 PPR repeat family 3.7E-11 33 30.00 198 248
PPR_3 Pentatricopeptide repeat domain 0.0012 9 25.00 199 247
PPR PPR repeat 6.4E-09 26 25.00 201 229
AAA_lid_7 Midasin AAA lid domain 0.034 4 22.70 210 231
PPR PPR repeat 0.0031 8 25.00 237 267
PPR_1 PPR repeat 0.041 4 23.80 266 296
PPR PPR repeat 0.031 5 25.00 275 296
PPR_2 PPR repeat family 0.019 5 30.00 276 296
TPR_19 Tetratricopeptide repeat 0.042 4 25.00 286 329
RNPP_C RNPP family C-terminal domain 0.36 0 26.50 301 330
DUF1685 Protein of unknown function (DUF1685) 0.77 -1 20.30 302 317
PPR_3 Pentatricopeptide repeat domain 0.0028 8 25.00 304 339
PPR_2 PPR repeat family 6.9E-07 19 30.00 305 346
PPR PPR repeat 5.5E-07 20 25.00 305 333
AAA_lid_7 Midasin AAA lid domain 0.58 0 22.70 307 347
PPR_1 PPR repeat 0.28 1 23.80 314 328
PPR_long Pentacotripeptide-repeat region of PRORP 0.02 4 27.00 367 434
RPN7 26S proteasome subunit RPN7 0.027 4 25.30 369 406
PPR_3 Pentatricopeptide repeat domain 9.2E-05 12 25.00 373 401
PPR_2 PPR repeat family 4.7E-06 17 30.00 374 401
PPR PPR repeat 0.001 9 25.00 375 400
PPR_1 PPR repeat 0.0033 7 23.80 376 399
PPR_2 PPR repeat family 5.3E-10 29 30.00 401 434
PPR_1 PPR repeat 7.5E-07 19 23.80 402 429
PPR_3 Pentatricopeptide repeat domain 6.4E-05 13 25.00 403 442
PPR PPR repeat 1.8E-08 24 25.00 404 434
PPR_2 PPR repeat family 2.7E-10 30 30.00 432 479
PPR_1 PPR repeat 8.9E-06 15 23.80 433 460
PPR PPR repeat 5.7E-09 26 25.00 435 462
AAA_lid_7 Midasin AAA lid domain 0.009 6 22.70 441 464
PPR_long Pentacotripeptide-repeat region of PRORP 0.0029 7 27.00 450 537
PPR_3 Pentatricopeptide repeat domain 0.017 5 25.00 463 502
PPR PPR repeat 0.026 5 25.00 471 501
PPR_2 PPR repeat family 0.61 0 30.00 471 505
PPR_3 Pentatricopeptide repeat domain 0.0023 8 25.00 497 531
RPN7 26S proteasome subunit RPN7 0.14 2 25.30 497 535
PPR_1 PPR repeat 0.0045 7 23.80 500 529
PPR_2 PPR repeat family 0.0032 8 30.00 509 536
PPR PPR repeat 3.3E-05 14 25.00 509 534
TPR_14 Tetratricopeptide repeat 0.23 3 23.50 511 539
TPR_19 Tetratricopeptide repeat 0.043 4 25.00 519 565
PPR_3 Pentatricopeptide repeat domain 2.2E-05 14 25.00 535 574
PPR_2 PPR repeat family 3.8E-09 27 30.00 535 581
PPR_1 PPR repeat 0.00065 9 23.80 535 562
PPR PPR repeat 2.3E-07 21 25.00 538 567
TPR_14 Tetratricopeptide repeat 0.00054 11 23.50 538 572
PPR_long Pentacotripeptide-repeat region of PRORP 5.1E-06 16 27.00 547 667
PPR_3 Pentatricopeptide repeat domain 8.2E-05 12 25.00 558 615
PPR PPR repeat 0.046 4 25.00 578 599
PPR_1 PPR repeat 3.2E-08 23 23.80 602 633
PPR_2 PPR repeat family 0.00044 10 30.00 608 633
PPR PPR repeat 8.3E-07 19 25.00 608 634
TPR_14 Tetratricopeptide repeat 0.91 1 23.50 613 633
TPR_19 Tetratricopeptide repeat 0.13 3 25.00 614 649
PPR_3 Pentatricopeptide repeat domain 0.015 5 25.00 635 664
PPR_1 PPR repeat 0.4 0 23.80 636 646
PPR_2 PPR repeat family 0.015 5 30.00 637 658
PPR PPR repeat 0.0039 7 25.00 640 658
TPR_19 Tetratricopeptide repeat 0.69 0 25.00 652 691
PPR PPR repeat 0.001 9 25.00 675 704
PPR_3 Pentatricopeptide repeat domain 0.65 0 25.00 679 705
PPR_2 PPR repeat family 0.18 2 30.00 681 705
DYW_deaminase DYW family of nucleic acid deaminases 0 139 31.60 708 831
DUF1685 Protein of unknown function (DUF1685) 1.6E-25 79 20.30 843 892

938

RNPP_C
PPR_1
PPR_2
PPR
PPR_3
PPR_long
RPN7
PPR_1
RNPP_C
PPR_2
PPR_3
RPN7
PPR_1
PPR
TPR_19
TPR_14
PPR_long
PPR_1
PPR_2
PPR_3
PPR
AAA_lid_7
PPR
PPR_1
PPR
PPR_2
TPR_19
RNPP_C
DUF1685
PPR_3
PPR_2
PPR
AAA_lid_7
PPR_1
PPR_long
RPN7
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR_1
PPR_3
PPR
PPR_2
PPR_1
PPR
AAA_lid_7
PPR_long
PPR_3
PPR
PPR_2
PPR_3
RPN7
PPR_1
PPR_2
PPR
TPR_14
TPR_19
PPR_3
PPR_2
PPR_1
PPR
TPR_14
PPR_long
PPR_3
PPR
PPR_1
PPR_2
PPR
TPR_14
TPR_19
PPR_3
PPR_1
PPR_2
PPR
TPR_19
PPR
PPR_3
PPR_2
DYW_deaminase
DUF1685

References:

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_14

AAA_lid_7

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

DUF1685

DYW_deaminase

RNPP_C

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
RNPP_C	RNPP family C-terminal domain	0.25	1	26.50	94	128
PPR_1	PPR repeat	9.9E-06	15	23.80	99	125
PPR_2	PPR repeat family	1.1E-10	31	30.00	100	145
PPR	PPR repeat	4.6E-10	29	25.00	100	130
PPR_3	Pentatricopeptide repeat domain	0.0001	12	25.00	100	145
PPR_long	Pentacotripeptide-repeat region of PRORP	0.16	1	27.00	101	183
RPN7	26S proteasome subunit RPN7	0.67	-1	25.30	104	132
PPR_1	PPR repeat	0.75	-1	23.80	129	137
RNPP_C	RNPP family C-terminal domain	0.011	5	26.50	162	195
PPR_2	PPR repeat family	5.3E-06	16	30.00	168	200
PPR_3	Pentatricopeptide repeat domain	0.0014	9	25.00	170	198
RPN7	26S proteasome subunit RPN7	0.013	5	25.30	173	200
PPR_1	PPR repeat	5.1E-06	16	23.80	173	196
PPR	PPR repeat	1.1E-06	19	25.00	173	200
TPR_19	Tetratricopeptide repeat	0.19	2	25.00	175	197
TPR_14	Tetratricopeptide repeat	0.0099	7	23.50	175	195
PPR_long	Pentacotripeptide-repeat region of PRORP	3.5E-05	13	27.00	185	284
PPR_1	PPR repeat	2.7E-05	14	23.80	198	226
PPR_2	PPR repeat family	3.7E-11	33	30.00	198	248
PPR_3	Pentatricopeptide repeat domain	0.0012	9	25.00	199	247
PPR	PPR repeat	6.4E-09	26	25.00	201	229
AAA_lid_7	Midasin AAA lid domain	0.034	4	22.70	210	231
PPR	PPR repeat	0.0031	8	25.00	237	267
PPR_1	PPR repeat	0.041	4	23.80	266	296
PPR	PPR repeat	0.031	5	25.00	275	296
PPR_2	PPR repeat family	0.019	5	30.00	276	296
TPR_19	Tetratricopeptide repeat	0.042	4	25.00	286	329
RNPP_C	RNPP family C-terminal domain	0.36	0	26.50	301	330
DUF1685	Protein of unknown function (DUF1685)	0.77	-1	20.30	302	317
PPR_3	Pentatricopeptide repeat domain	0.0028	8	25.00	304	339
PPR_2	PPR repeat family	6.9E-07	19	30.00	305	346
PPR	PPR repeat	5.5E-07	20	25.00	305	333
AAA_lid_7	Midasin AAA lid domain	0.58	0	22.70	307	347
PPR_1	PPR repeat	0.28	1	23.80	314	328
PPR_long	Pentacotripeptide-repeat region of PRORP	0.02	4	27.00	367	434
RPN7	26S proteasome subunit RPN7	0.027	4	25.30	369	406
PPR_3	Pentatricopeptide repeat domain	9.2E-05	12	25.00	373	401
PPR_2	PPR repeat family	4.7E-06	17	30.00	374	401
PPR	PPR repeat	0.001	9	25.00	375	400
PPR_1	PPR repeat	0.0033	7	23.80	376	399
PPR_2	PPR repeat family	5.3E-10	29	30.00	401	434
PPR_1	PPR repeat	7.5E-07	19	23.80	402	429
PPR_3	Pentatricopeptide repeat domain	6.4E-05	13	25.00	403	442
PPR	PPR repeat	1.8E-08	24	25.00	404	434
PPR_2	PPR repeat family	2.7E-10	30	30.00	432	479
PPR_1	PPR repeat	8.9E-06	15	23.80	433	460
PPR	PPR repeat	5.7E-09	26	25.00	435	462
AAA_lid_7	Midasin AAA lid domain	0.009	6	22.70	441	464
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0029	7	27.00	450	537
PPR_3	Pentatricopeptide repeat domain	0.017	5	25.00	463	502
PPR	PPR repeat	0.026	5	25.00	471	501
PPR_2	PPR repeat family	0.61	0	30.00	471	505
PPR_3	Pentatricopeptide repeat domain	0.0023	8	25.00	497	531
RPN7	26S proteasome subunit RPN7	0.14	2	25.30	497	535
PPR_1	PPR repeat	0.0045	7	23.80	500	529
PPR_2	PPR repeat family	0.0032	8	30.00	509	536
PPR	PPR repeat	3.3E-05	14	25.00	509	534
TPR_14	Tetratricopeptide repeat	0.23	3	23.50	511	539
TPR_19	Tetratricopeptide repeat	0.043	4	25.00	519	565
PPR_3	Pentatricopeptide repeat domain	2.2E-05	14	25.00	535	574
PPR_2	PPR repeat family	3.8E-09	27	30.00	535	581
PPR_1	PPR repeat	0.00065	9	23.80	535	562
PPR	PPR repeat	2.3E-07	21	25.00	538	567
TPR_14	Tetratricopeptide repeat	0.00054	11	23.50	538	572
PPR_long	Pentacotripeptide-repeat region of PRORP	5.1E-06	16	27.00	547	667
PPR_3	Pentatricopeptide repeat domain	8.2E-05	12	25.00	558	615
PPR	PPR repeat	0.046	4	25.00	578	599
PPR_1	PPR repeat	3.2E-08	23	23.80	602	633
PPR_2	PPR repeat family	0.00044	10	30.00	608	633
PPR	PPR repeat	8.3E-07	19	25.00	608	634
TPR_14	Tetratricopeptide repeat	0.91	1	23.50	613	633
TPR_19	Tetratricopeptide repeat	0.13	3	25.00	614	649
PPR_3	Pentatricopeptide repeat domain	0.015	5	25.00	635	664
PPR_1	PPR repeat	0.4	0	23.80	636	646
PPR_2	PPR repeat family	0.015	5	30.00	637	658
PPR	PPR repeat	0.0039	7	25.00	640	658
TPR_19	Tetratricopeptide repeat	0.69	0	25.00	652	691
PPR	PPR repeat	0.001	9	25.00	675	704
PPR_3	Pentatricopeptide repeat domain	0.65	0	25.00	679	705
PPR_2	PPR repeat family	0.18	2	30.00	681	705
DYW_deaminase	DYW family of nucleic acid deaminases	0	139	31.60	708	831
DUF1685	Protein of unknown function (DUF1685)	1.6E-25	79	20.30	843	892