c2pfam

AT3G23060.1 :

Domain Description Evalue Bits GA Start End
zf-RING_6 zf-RING of BARD1-type protein 8.8E-05 13 35.00 13 57
Siva Cd27 binding protein (Siva) 0.0018 8 20.90 13 57
zf-RING_10 zinc RING finger of MSL2 4.3E-05 14 31.00 14 57
zf-Nse Zinc-finger of the MIZ type in Nse subunit 1.6E-05 15 20.70 14 57
YdjO Cold-inducible protein YdjO 0.75 0 27.00 15 25
zf-RING_2 Ring finger domain 6.1E-10 30 27.30 15 57
zf-rbx1 RING-H2 zinc finger domain 7.5E-05 13 31.00 15 57
Prok-RING_4 Prokaryotic RING finger family 4 0.064 4 27.00 15 26
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 0.0012 9 27.30 15 58
DUF5810 Family of unknown function (DUF5810) 0.0055 7 26.90 15 31
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 2.7E-06 18 27.00 15 58
zf-RING_11 RING-like zinc finger 0.0017 9 27.00 16 41
Prok-RING_4 Prokaryotic RING finger family 4 0.00069 10 27.00 16 59
zf-RING_5 zinc-RING finger domain 5.3E-09 26 27.90 16 57
zf-C3HC4_4 zinc finger of C3HC4-type, RING 4.7E-07 20 30.00 16 56
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 6E-12 36 27.00 16 56
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 9.6E-12 35 21.00 16 56
zf-RING_UBOX RING-type zinc-finger 4.7E-11 33 25.20 16 54
YdjO Cold-inducible protein YdjO 7.5E-06 16 27.00 25 59
zf-C3HC4_5 Zinc finger, C3HC4 type (RING finger) 0.011 6 27.00 29 57
DUF5810 Family of unknown function (DUF5810) 0.34 2 26.90 52 58
RAWUL RAWUL domain RING finger- and WD40-associated ubiquitin-like 5.2E-07 21 33.50 395 444

480

zf-RING_6
Siva
zf-RING_10
zf-Nse
YdjO
zf-RING_2
zf-rbx1
Prok-RING_4
Zn_ribbon_17
DUF5810
zf-C3HC4_3
zf-RING_11
Prok-RING_4
zf-RING_5
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
YdjO
zf-C3HC4_5
DUF5810
RAWUL

References:

zf-C3HC4_5

Zn_ribbon_17

RAWUL

Prok-RING_4

zf-RING_5

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

YdjO

zf-C3HC4_2

zf-RING_6

Siva
9177220 CD27, a member of the tumor necrosis factor receptor family, induces apoptosis and binds to Siva, a proapoptotic protein. Proc Natl Acad Sci U S A 1997;94:6346-6351.
12011449 Siva-1 binds to and inhibits BCL-X(L)-mediated protection against UV radiation-induced apoptosis. Proc Natl Acad Sci U S A 2002;99:6925-6930.
10597319 Murine Siva-1 and Siva-2, alternate splice forms of the mouse Siva gene, both bind to CD27 but differentially transduce apoptosis. Oncogene 1999;18:7174-7179.

zf-RING_2

DUF5810

zf-RING_11

zf-RING_10

zf-C3HC4_3

zf-rbx1

zf-RING_UBOX

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

zf-C3HC4_4

Domain	Description	Evalue	Bits	GA	Start	End
zf-RING_6	zf-RING of BARD1-type protein	8.8E-05	13	35.00	13	57
Siva	Cd27 binding protein (Siva)	0.0018	8	20.90	13	57
zf-RING_10	zinc RING finger of MSL2	4.3E-05	14	31.00	14	57
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	1.6E-05	15	20.70	14	57
YdjO	Cold-inducible protein YdjO	0.75	0	27.00	15	25
zf-RING_2	Ring finger domain	6.1E-10	30	27.30	15	57
zf-rbx1	RING-H2 zinc finger domain	7.5E-05	13	31.00	15	57
Prok-RING_4	Prokaryotic RING finger family 4	0.064	4	27.00	15	26
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	0.0012	9	27.30	15	58
DUF5810	Family of unknown function (DUF5810)	0.0055	7	26.90	15	31
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	2.7E-06	18	27.00	15	58
zf-RING_11	RING-like zinc finger	0.0017	9	27.00	16	41
Prok-RING_4	Prokaryotic RING finger family 4	0.00069	10	27.00	16	59
zf-RING_5	zinc-RING finger domain	5.3E-09	26	27.90	16	57
zf-C3HC4_4	zinc finger of C3HC4-type, RING	4.7E-07	20	30.00	16	56
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	6E-12	36	27.00	16	56
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	9.6E-12	35	21.00	16	56
zf-RING_UBOX	RING-type zinc-finger	4.7E-11	33	25.20	16	54
YdjO	Cold-inducible protein YdjO	7.5E-06	16	27.00	25	59
zf-C3HC4_5	Zinc finger, C3HC4 type (RING finger)	0.011	6	27.00	29	57
DUF5810	Family of unknown function (DUF5810)	0.34	2	26.90	52	58
RAWUL	RAWUL domain RING finger- and WD40-associated ubiquitin-like	5.2E-07	21	33.50	395	444