c2pfam

AT1G02370.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.52 1 25.00 115 132
PPR_2 PPR repeat family 0.00061 10 30.00 117 135
PPR_3 Pentatricopeptide repeat domain 0.085 3 25.00 120 148
PPR_long Pentacotripeptide-repeat region of PRORP 0.035 3 27.00 120 192
PPR PPR repeat 2.8E-05 14 25.00 173 202
PPR_2 PPR repeat family 0.016 5 30.00 174 201
PPR_3 Pentatricopeptide repeat domain 9.2E-06 15 25.00 198 253
PPR_2 PPR repeat family 6.5E-10 29 30.00 210 252
PPR PPR repeat 3E-05 14 25.00 210 238
PPR_long Pentacotripeptide-repeat region of PRORP 1.6E-06 17 27.00 230 346
PPR PPR repeat 8.7E-05 12 25.00 243 270
TPR_19 Tetratricopeptide repeat 0.03 4 25.00 262 305
PPR_3 Pentatricopeptide repeat domain 0.0058 6 25.00 264 324
PPR PPR repeat 4.5E-05 13 25.00 280 307
TPR_7 Tetratricopeptide repeat 0.0011 9 27.90 280 300
TPR_1 Tetratricopeptide repeat 0.00037 10 20.40 280 297
TPR_8 Tetratricopeptide repeat 0.018 5 25.70 283 302
PPR_2 PPR repeat family 0.057 3 30.00 283 308
TPR_14 Tetratricopeptide repeat 0.89 0 23.50 284 319
PPR_2 PPR repeat family 0.0012 9 30.00 319 359
PPR_3 Pentatricopeptide repeat domain 0.12 2 25.00 345 373
PPR PPR repeat 0.00054 10 25.00 350 377
TPR_14 Tetratricopeptide repeat 0.023 5 23.50 351 381
TPR_8 Tetratricopeptide repeat 0.051 4 25.70 386 407
PPR PPR repeat 0.0032 7 25.00 387 407
PPR_2 PPR repeat family 0.0062 6 30.00 387 407
TPR_19 Tetratricopeptide repeat 0.00052 10 25.00 389 415
TPR_1 Tetratricopeptide repeat 0.095 2 20.40 391 404
TPR_7 Tetratricopeptide repeat 0.17 2 27.90 391 413
TPR_14 Tetratricopeptide repeat 0.003 8 23.50 420 450
TPR_8 Tetratricopeptide repeat 0.79 0 25.70 427 446
TPR_19 Tetratricopeptide repeat 0.01 6 25.00 428 453
Vir_act_alpha_C Virulence activator alpha C-term 0.00014 12 22.40 498 532

537

PPR
PPR_2
PPR_3
PPR_long
PPR
PPR_2
PPR_3
PPR_2
PPR
PPR_long
PPR
TPR_19
PPR_3
PPR
TPR_7
TPR_1
TPR_8
PPR_2
TPR_14
PPR_2
PPR_3
PPR
TPR_14
TPR_8
PPR
PPR_2
TPR_19
TPR_1
TPR_7
TPR_14
TPR_8
TPR_19
Vir_act_alpha_C

References:

TPR_7

TPR_8

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

TPR_14

PPR_long

PPR_3

PPR_2

Vir_act_alpha_C

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.52	1	25.00	115	132
PPR_2	PPR repeat family	0.00061	10	30.00	117	135
PPR_3	Pentatricopeptide repeat domain	0.085	3	25.00	120	148
PPR_long	Pentacotripeptide-repeat region of PRORP	0.035	3	27.00	120	192
PPR	PPR repeat	2.8E-05	14	25.00	173	202
PPR_2	PPR repeat family	0.016	5	30.00	174	201
PPR_3	Pentatricopeptide repeat domain	9.2E-06	15	25.00	198	253
PPR_2	PPR repeat family	6.5E-10	29	30.00	210	252
PPR	PPR repeat	3E-05	14	25.00	210	238
PPR_long	Pentacotripeptide-repeat region of PRORP	1.6E-06	17	27.00	230	346
PPR	PPR repeat	8.7E-05	12	25.00	243	270
TPR_19	Tetratricopeptide repeat	0.03	4	25.00	262	305
PPR_3	Pentatricopeptide repeat domain	0.0058	6	25.00	264	324
PPR	PPR repeat	4.5E-05	13	25.00	280	307
TPR_7	Tetratricopeptide repeat	0.0011	9	27.90	280	300
TPR_1	Tetratricopeptide repeat	0.00037	10	20.40	280	297
TPR_8	Tetratricopeptide repeat	0.018	5	25.70	283	302
PPR_2	PPR repeat family	0.057	3	30.00	283	308
TPR_14	Tetratricopeptide repeat	0.89	0	23.50	284	319
PPR_2	PPR repeat family	0.0012	9	30.00	319	359
PPR_3	Pentatricopeptide repeat domain	0.12	2	25.00	345	373
PPR	PPR repeat	0.00054	10	25.00	350	377
TPR_14	Tetratricopeptide repeat	0.023	5	23.50	351	381
TPR_8	Tetratricopeptide repeat	0.051	4	25.70	386	407
PPR	PPR repeat	0.0032	7	25.00	387	407
PPR_2	PPR repeat family	0.0062	6	30.00	387	407
TPR_19	Tetratricopeptide repeat	0.00052	10	25.00	389	415
TPR_1	Tetratricopeptide repeat	0.095	2	20.40	391	404
TPR_7	Tetratricopeptide repeat	0.17	2	27.90	391	413
TPR_14	Tetratricopeptide repeat	0.003	8	23.50	420	450
TPR_8	Tetratricopeptide repeat	0.79	0	25.70	427	446
TPR_19	Tetratricopeptide repeat	0.01	6	25.00	428	453
Vir_act_alpha_C	Virulence activator alpha C-term	0.00014	12	22.40	498	532