c2pfam

AT3G23980.1 :

Domain Description Evalue Bits GA Start End
ATG16 Autophagy protein 16 (ATG16) 0.95 -1 35.00 22 76
BRE1 BRE1 E3 ubiquitin ligase 0.73 -1 23.40 24 38
RACo_linker RACo linker region 0.0034 7 26.20 351 405
ATG16 Autophagy protein 16 (ATG16) 6.3E-06 16 35.00 353 456
BRE1 BRE1 E3 ubiquitin ligase 1.1E-06 18 23.40 354 421
DUF4164 Domain of unknown function (DUF4164) 0.002 8 27.20 355 395
CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 3.4E-06 16 30.00 359 438
BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 0.00021 11 25.00 376 432
SLATT_6 SMODS and SLOG-associating 2TM effector domain 6 0.0017 7 116.10 395 456
DUF4164 Domain of unknown function (DUF4164) 0.64 0 27.20 408 432
IL11 Interleukin 11 0.0003 10 25.00 408 448
RACo_linker RACo linker region 0.063 2 26.20 412 434
BRE1 BRE1 E3 ubiquitin ligase 0.099 2 23.40 443 519
CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 6.1E-05 12 30.00 447 524
ATG16 Autophagy protein 16 (ATG16) 0.02 4 35.00 460 521
IL11 Interleukin 11 0.039 3 25.00 470 520
DUF4164 Domain of unknown function (DUF4164) 0.19 1 27.20 476 516
BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 0.083 3 25.00 476 516
BRE1 BRE1 E3 ubiquitin ligase 0.09 2 23.40 482 519
SLATT_6 SMODS and SLOG-associating 2TM effector domain 6 0.13 1 116.10 492 553
BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 0.035 4 25.00 594 655
DUF4164 Domain of unknown function (DUF4164) 1.2E-05 15 27.20 603 653
BRE1 BRE1 E3 ubiquitin ligase 0.071 3 23.40 604 660
CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 0.1 2 30.00 611 653
IL11 Interleukin 11 0.84 -2 25.00 633 652

714

ATG16
BRE1
RACo_linker
ATG16
BRE1
DUF4164
CENP-F_leu_zip
BLOC1_2
SLATT_6
DUF4164
IL11
RACo_linker
BRE1
CENP-F_leu_zip
ATG16
IL11
DUF4164
BLOC1_2
BRE1
SLATT_6
BLOC1_2
DUF4164
BRE1
CENP-F_leu_zip
IL11

References:

SLATT_6

IL11
9416001 Interleukin-11. Int J Biochem Cell Biol 1997;29:1059-1062.

BRE1
16337599 The human homolog of yeast BRE1 functions as a transcriptional coactivator through direct activator interactions. Mol Cell. 2005;20:759-770.

BLOC1_2
15102850 Identification of snapin and three novel proteins (BLOS1, BLOS2, and BLOS3/reduced pigmentation) as subunits of biogenesis of lysosome-related organelles complex-1 (BLOC-1). J Biol Chem. 2004;279:28393-28401.

ATG16
10406794 Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. EMBO J. 1999;18:3888-3896.
17012802 Expression, purification and crystallization of the Atg5-Atg16 complex essential for autophagy. Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006;62:1021-1023.

DUF4164

CENP-F_leu_zip
7542657 CENP-F is a protein of the nuclear matrix that assembles onto kinetochores at late G2 and is rapidly degraded after mitosis. J Cell Biol. 1995;130:507-518.
14555653 LEK1 is a potential inhibitor of pocket protein-mediated cellular processes. J Biol Chem. 2004;279:664-676.

RACo_linker

Domain	Description	Evalue	Bits	GA	Start	End
ATG16	Autophagy protein 16 (ATG16)	0.95	-1	35.00	22	76
BRE1	BRE1 E3 ubiquitin ligase	0.73	-1	23.40	24	38
RACo_linker	RACo linker region	0.0034	7	26.20	351	405
ATG16	Autophagy protein 16 (ATG16)	6.3E-06	16	35.00	353	456
BRE1	BRE1 E3 ubiquitin ligase	1.1E-06	18	23.40	354	421
DUF4164	Domain of unknown function (DUF4164)	0.002	8	27.20	355	395
CENP-F_leu_zip	Leucine-rich repeats of kinetochore protein Cenp-F/LEK1	3.4E-06	16	30.00	359	438
BLOC1_2	Biogenesis of lysosome-related organelles complex-1 subunit 2	0.00021	11	25.00	376	432
SLATT_6	SMODS and SLOG-associating 2TM effector domain 6	0.0017	7	116.10	395	456
DUF4164	Domain of unknown function (DUF4164)	0.64	0	27.20	408	432
IL11	Interleukin 11	0.0003	10	25.00	408	448
RACo_linker	RACo linker region	0.063	2	26.20	412	434
BRE1	BRE1 E3 ubiquitin ligase	0.099	2	23.40	443	519
CENP-F_leu_zip	Leucine-rich repeats of kinetochore protein Cenp-F/LEK1	6.1E-05	12	30.00	447	524
ATG16	Autophagy protein 16 (ATG16)	0.02	4	35.00	460	521
IL11	Interleukin 11	0.039	3	25.00	470	520
DUF4164	Domain of unknown function (DUF4164)	0.19	1	27.20	476	516
BLOC1_2	Biogenesis of lysosome-related organelles complex-1 subunit 2	0.083	3	25.00	476	516
BRE1	BRE1 E3 ubiquitin ligase	0.09	2	23.40	482	519
SLATT_6	SMODS and SLOG-associating 2TM effector domain 6	0.13	1	116.10	492	553
BLOC1_2	Biogenesis of lysosome-related organelles complex-1 subunit 2	0.035	4	25.00	594	655
DUF4164	Domain of unknown function (DUF4164)	1.2E-05	15	27.20	603	653
BRE1	BRE1 E3 ubiquitin ligase	0.071	3	23.40	604	660
CENP-F_leu_zip	Leucine-rich repeats of kinetochore protein Cenp-F/LEK1	0.1	2	30.00	611	653
IL11	Interleukin 11	0.84	-2	25.00	633	652