c2pfam

AT3G24000.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 3.5E-05 13 25.00 91 122
PPR_2 PPR repeat family 8.3E-08 22 30.00 94 124
AEP1 ATPase expression protein 1 0.0019 7 27.00 97 136
PPR PPR repeat 5.7E-09 25 25.00 99 125
PPR_1 PPR repeat 2.9E-07 20 23.80 99 121
PPR_3 Pentatricopeptide repeat domain 0.0028 7 25.00 124 170
PPR_1 PPR repeat 1.3E-06 17 23.80 125 152
PPR_2 PPR repeat family 2.5E-13 40 30.00 125 170
PPR PPR repeat 1.3E-08 24 25.00 127 156
PPR_long Pentacotripeptide-repeat region of PRORP 0.00049 9 27.00 147 178
PPR_1 PPR repeat 0.037 3 23.80 156 169
PPR_3 Pentatricopeptide repeat domain 0.91 -1 25.00 189 222
PPR_2 PPR repeat family 0.07 3 30.00 195 225
PPR PPR repeat 0.0014 8 25.00 200 225
PPR_1 PPR repeat 0.12 2 23.80 202 220
HrpB1_HrpK Bacterial type III secretion protein (HrpB1_HrpK) 0.26 0 24.00 221 254
PPR_long Pentacotripeptide-repeat region of PRORP 0.0004 9 27.00 226 323
PPR_1 PPR repeat 0.00061 9 23.80 226 253
PPR_2 PPR repeat family 2E-12 37 30.00 226 272
PPR PPR repeat 8.1E-09 25 25.00 228 258
PPR_3 Pentatricopeptide repeat domain 3.8E-05 13 25.00 228 272
PPR_long Pentacotripeptide-repeat region of PRORP 1.1E-05 14 27.00 238 378
PPR PPR repeat 0.0023 8 25.00 263 292
AEP1 ATPase expression protein 1 0.00011 11 27.00 296 338
PPR PPR repeat 5.2E-06 16 25.00 301 327
PPR_2 PPR repeat family 0.00016 11 30.00 301 327
PPR_3 Pentatricopeptide repeat domain 0.016 5 25.00 301 325
PPR_1 PPR repeat 0.00019 11 23.80 301 322
PPR_1 PPR repeat 8.2E-05 12 23.80 325 355
PPR_3 Pentatricopeptide repeat domain 4.6E-10 29 25.00 326 373
PPR_2 PPR repeat family 1.6E-13 40 30.00 326 374
PPR PPR repeat 9.3E-12 34 25.00 329 359
PPR_long Pentacotripeptide-repeat region of PRORP 7E-06 15 27.00 346 441
HrpB1_HrpK Bacterial type III secretion protein (HrpB1_HrpK) 0.27 0 24.00 354 386
PPR PPR repeat 3.2E-06 17 25.00 365 394
PPR_2 PPR repeat family 0.00026 11 30.00 369 399
PPR_3 Pentatricopeptide repeat domain 0.0001 12 25.00 389 440
PPR_1 PPR repeat 5.2E-07 19 23.80 392 424
PPR PPR repeat 8.4E-05 12 25.00 400 424
PPR_2 PPR repeat family 0.018 5 30.00 401 425
HrpB1_HrpK Bacterial type III secretion protein (HrpB1_HrpK) 0.0045 6 24.00 410 463
PPR_2 PPR repeat family 0.0073 6 30.00 472 496
PPR PPR repeat 0.00031 10 25.00 472 495
PPR_3 Pentatricopeptide repeat domain 0.059 3 25.00 473 496
HrpB1_HrpK Bacterial type III secretion protein (HrpB1_HrpK) 0.58 -1 24.00 473 493
PPR_long Pentacotripeptide-repeat region of PRORP 0.53 -1 27.00 474 498
PPR_1 PPR repeat 0.086 2 23.80 477 491
DYW_deaminase DYW family of nucleic acid deaminases 0 130 31.60 499 623
Nkap_C NF-kappa-B-activating protein C-terminal domain 0.00015 11 25.00 508 548

633

PPR_3
PPR_2
AEP1
PPR
PPR_1
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_1
HrpB1_HrpK
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR
AEP1
PPR
PPR_2
PPR_3
PPR_1
PPR_1
PPR_3
PPR_2
PPR
PPR_long
HrpB1_HrpK
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
HrpB1_HrpK
PPR_2
PPR
PPR_3
HrpB1_HrpK
PPR_long
PPR_1
DYW_deaminase
Nkap_C

References:

HrpB1_HrpK

Nkap_C

AEP1

DYW_deaminase

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	3.5E-05	13	25.00	91	122
PPR_2	PPR repeat family	8.3E-08	22	30.00	94	124
AEP1	ATPase expression protein 1	0.0019	7	27.00	97	136
PPR	PPR repeat	5.7E-09	25	25.00	99	125
PPR_1	PPR repeat	2.9E-07	20	23.80	99	121
PPR_3	Pentatricopeptide repeat domain	0.0028	7	25.00	124	170
PPR_1	PPR repeat	1.3E-06	17	23.80	125	152
PPR_2	PPR repeat family	2.5E-13	40	30.00	125	170
PPR	PPR repeat	1.3E-08	24	25.00	127	156
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00049	9	27.00	147	178
PPR_1	PPR repeat	0.037	3	23.80	156	169
PPR_3	Pentatricopeptide repeat domain	0.91	-1	25.00	189	222
PPR_2	PPR repeat family	0.07	3	30.00	195	225
PPR	PPR repeat	0.0014	8	25.00	200	225
PPR_1	PPR repeat	0.12	2	23.80	202	220
HrpB1_HrpK	Bacterial type III secretion protein (HrpB1_HrpK)	0.26	0	24.00	221	254
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0004	9	27.00	226	323
PPR_1	PPR repeat	0.00061	9	23.80	226	253
PPR_2	PPR repeat family	2E-12	37	30.00	226	272
PPR	PPR repeat	8.1E-09	25	25.00	228	258
PPR_3	Pentatricopeptide repeat domain	3.8E-05	13	25.00	228	272
PPR_long	Pentacotripeptide-repeat region of PRORP	1.1E-05	14	27.00	238	378
PPR	PPR repeat	0.0023	8	25.00	263	292
AEP1	ATPase expression protein 1	0.00011	11	27.00	296	338
PPR	PPR repeat	5.2E-06	16	25.00	301	327
PPR_2	PPR repeat family	0.00016	11	30.00	301	327
PPR_3	Pentatricopeptide repeat domain	0.016	5	25.00	301	325
PPR_1	PPR repeat	0.00019	11	23.80	301	322
PPR_1	PPR repeat	8.2E-05	12	23.80	325	355
PPR_3	Pentatricopeptide repeat domain	4.6E-10	29	25.00	326	373
PPR_2	PPR repeat family	1.6E-13	40	30.00	326	374
PPR	PPR repeat	9.3E-12	34	25.00	329	359
PPR_long	Pentacotripeptide-repeat region of PRORP	7E-06	15	27.00	346	441
HrpB1_HrpK	Bacterial type III secretion protein (HrpB1_HrpK)	0.27	0	24.00	354	386
PPR	PPR repeat	3.2E-06	17	25.00	365	394
PPR_2	PPR repeat family	0.00026	11	30.00	369	399
PPR_3	Pentatricopeptide repeat domain	0.0001	12	25.00	389	440
PPR_1	PPR repeat	5.2E-07	19	23.80	392	424
PPR	PPR repeat	8.4E-05	12	25.00	400	424
PPR_2	PPR repeat family	0.018	5	30.00	401	425
HrpB1_HrpK	Bacterial type III secretion protein (HrpB1_HrpK)	0.0045	6	24.00	410	463
PPR_2	PPR repeat family	0.0073	6	30.00	472	496
PPR	PPR repeat	0.00031	10	25.00	472	495
PPR_3	Pentatricopeptide repeat domain	0.059	3	25.00	473	496
HrpB1_HrpK	Bacterial type III secretion protein (HrpB1_HrpK)	0.58	-1	24.00	473	493
PPR_long	Pentacotripeptide-repeat region of PRORP	0.53	-1	27.00	474	498
PPR_1	PPR repeat	0.086	2	23.80	477	491
DYW_deaminase	DYW family of nucleic acid deaminases	0	130	31.60	499	623
Nkap_C	NF-kappa-B-activating protein C-terminal domain	0.00015	11	25.00	508	548