c2pfam

AT3G25620.1 :

Domain Description Evalue Bits GA Start End
ABC_tran ABC transporter 6.1E-29 92 23.10 101 250
AAA_25 AAA domain 1.8E-05 15 27.00 102 131
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00024 12 26.60 105 135
IstB_IS21 IstB-like ATP binding protein 0.00064 10 24.10 107 132
AAA_16 AAA ATPase domain 2E-06 19 32.60 109 145
Rad17 Rad17 cell cycle checkpoint protein 0.00018 12 19.70 109 162
AAA_30 AAA domain 0.001 9 27.00 110 134
RsgA_GTPase RsgA GTPase 6.6E-05 14 30.00 111 138
AAA_22 AAA domain 0.00017 13 27.00 112 136
NACHT NACHT domain 0.00022 12 20.40 112 135
AAA_29 P-loop containing region of AAA domain 1.8E-05 15 27.00 112 136
AAA_33 AAA domain 1.1E-05 16 27.00 112 135
SMC_N RecF/RecN/SMC N terminal domain 0.014 5 40.00 113 130
SRP54 SRP54-type protein, GTPase domain 0.00038 11 20.50 113 136
Cytidylate_kin Cytidylate kinase 0.00029 11 20.40 114 140
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00029 11 27.00 114 153
AAA_28 AAA domain 2.4E-05 15 27.00 114 159
AAA ATPase family associated with various cellular activities (AAA) 5E-05 14 20.80 115 148
RNA_helicase RNA helicase 0.00022 12 21.50 115 138
AAA_5 AAA domain (dynein-related subfamily) 0.00013 13 20.80 115 137
AAA_23 AAA domain 5E-06 18 27.00 115 157
AAA_18 AAA domain 0.00047 11 29.40 116 134
SMC_N RecF/RecN/SMC N terminal domain 0.0029 8 40.00 223 285
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 3.1E-05 14 27.00 239 277
ABC2_membrane_7 ABC-2 type transporter 2.6E-12 37 22.70 279 344
ABC2_membrane_7 ABC-2 type transporter 0.0054 6 22.70 348 432

467

ABC_tran
AAA_25
TsaE
IstB_IS21
AAA_16
Rad17
AAA_30
RsgA_GTPase
AAA_22
NACHT
AAA_29
AAA_33
SMC_N
SRP54
Cytidylate_kin
AAA_21
AAA_28
AAA
RNA_helicase
AAA_5
AAA_23
AAA_18
SMC_N
AAA_21
ABC2_membrane_7
ABC2_membrane_7

References:

IstB_IS21

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

TsaE

RsgA_GTPase

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

Cytidylate_kin
9862805 Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity. Structure 1998;6:1517-1527.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_29

ABC2_membrane_7

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_33

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

AAA_28

AAA_25

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

AAA_22

AAA_21

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
ABC_tran	ABC transporter	6.1E-29	92	23.10	101	250
AAA_25	AAA domain	1.8E-05	15	27.00	102	131
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00024	12	26.60	105	135
IstB_IS21	IstB-like ATP binding protein	0.00064	10	24.10	107	132
AAA_16	AAA ATPase domain	2E-06	19	32.60	109	145
Rad17	Rad17 cell cycle checkpoint protein	0.00018	12	19.70	109	162
AAA_30	AAA domain	0.001	9	27.00	110	134
RsgA_GTPase	RsgA GTPase	6.6E-05	14	30.00	111	138
AAA_22	AAA domain	0.00017	13	27.00	112	136
NACHT	NACHT domain	0.00022	12	20.40	112	135
AAA_29	P-loop containing region of AAA domain	1.8E-05	15	27.00	112	136
AAA_33	AAA domain	1.1E-05	16	27.00	112	135
SMC_N	RecF/RecN/SMC N terminal domain	0.014	5	40.00	113	130
SRP54	SRP54-type protein, GTPase domain	0.00038	11	20.50	113	136
Cytidylate_kin	Cytidylate kinase	0.00029	11	20.40	114	140
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00029	11	27.00	114	153
AAA_28	AAA domain	2.4E-05	15	27.00	114	159
AAA	ATPase family associated with various cellular activities (AAA)	5E-05	14	20.80	115	148
RNA_helicase	RNA helicase	0.00022	12	21.50	115	138
AAA_5	AAA domain (dynein-related subfamily)	0.00013	13	20.80	115	137
AAA_23	AAA domain	5E-06	18	27.00	115	157
AAA_18	AAA domain	0.00047	11	29.40	116	134
SMC_N	RecF/RecN/SMC N terminal domain	0.0029	8	40.00	223	285
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	3.1E-05	14	27.00	239	277
ABC2_membrane_7	ABC-2 type transporter	2.6E-12	37	22.70	279	344
ABC2_membrane_7	ABC-2 type transporter	0.0054	6	22.70	348	432