c2pfam

AT1G15100.1 :

Domain Description Evalue Bits GA Start End
Prok-RING_1 Prokaryotic RING finger family 1 0.00035 11 29.10 83 114
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 9.8E-06 16 27.30 85 125
zf-RING_2 Ring finger domain 1.7E-15 48 27.30 85 128
zf-RING_11 RING-like zinc finger 3.9E-14 43 27.00 85 113
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 2.8E-08 24 27.00 85 130
FANCL_C FANCL C-terminal domain 0.00035 11 20.70 85 120
zf-C3HC4_4 zinc finger of C3HC4-type, RING 0.00048 11 30.00 86 127
zf-RING_UBOX RING-type zinc-finger 1.7E-07 22 25.20 86 125
Prok-RING_4 Prokaryotic RING finger family 4 2.7E-07 21 27.00 86 132
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1E-11 35 27.00 86 127
zf-rbx1 RING-H2 zinc finger domain 1.6E-11 35 31.00 86 128
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 6.6E-10 29 21.00 86 127
zf-RING_5 zinc-RING finger domain 1.2E-08 25 27.90 86 128
zf-RING_4 RING/Ubox like zinc-binding domain 5E-05 14 27.00 86 129
RINGv RING-variant domain 0.00022 12 21.60 86 127
zf-RING_10 zinc RING finger of MSL2 0.00023 12 31.00 86 129
PHD PHD-finger 0.00014 12 27.90 86 129
zf-RING-like RING-like domain 0.00096 10 21.60 86 127
zf-Nse Zinc-finger of the MIZ type in Nse subunit 0.0002 12 20.70 98 127
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 1.5E-06 19 21.40 103 131
Prok-RING_1 Prokaryotic RING finger family 1 0.02 5 29.10 120 136
zf-RING_UBOX RING-type zinc-finger 0.94 0 25.20 135 151

155

Prok-RING_1
Zn_ribbon_17
zf-RING_2
zf-RING_11
zf-C3HC4_3
FANCL_C
zf-C3HC4_4
zf-RING_UBOX
Prok-RING_4
zf-C3HC4_2
zf-rbx1
zf-C3HC4
zf-RING_5
zf-RING_4
RINGv
zf-RING_10
PHD
zf-RING-like
zf-Nse
zf-ANAPC11
Prok-RING_1
zf-RING_UBOX

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-C3HC4_2

zf-RING_10

RINGv

zf-ANAPC11

zf-RING_4

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

zf-RING_UBOX

zf-RING_5

Zn_ribbon_17

zf-RING_2

zf-rbx1

zf-RING-like

zf-RING_11

zf-C3HC4_4

zf-C3HC4_3

Prok-RING_4

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
Prok-RING_1	Prokaryotic RING finger family 1	0.00035	11	29.10	83	114
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	9.8E-06	16	27.30	85	125
zf-RING_2	Ring finger domain	1.7E-15	48	27.30	85	128
zf-RING_11	RING-like zinc finger	3.9E-14	43	27.00	85	113
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	2.8E-08	24	27.00	85	130
FANCL_C	FANCL C-terminal domain	0.00035	11	20.70	85	120
zf-C3HC4_4	zinc finger of C3HC4-type, RING	0.00048	11	30.00	86	127
zf-RING_UBOX	RING-type zinc-finger	1.7E-07	22	25.20	86	125
Prok-RING_4	Prokaryotic RING finger family 4	2.7E-07	21	27.00	86	132
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1E-11	35	27.00	86	127
zf-rbx1	RING-H2 zinc finger domain	1.6E-11	35	31.00	86	128
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	6.6E-10	29	21.00	86	127
zf-RING_5	zinc-RING finger domain	1.2E-08	25	27.90	86	128
zf-RING_4	RING/Ubox like zinc-binding domain	5E-05	14	27.00	86	129
RINGv	RING-variant domain	0.00022	12	21.60	86	127
zf-RING_10	zinc RING finger of MSL2	0.00023	12	31.00	86	129
PHD	PHD-finger	0.00014	12	27.90	86	129
zf-RING-like	RING-like domain	0.00096	10	21.60	86	127
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	0.0002	12	20.70	98	127
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	1.5E-06	19	21.40	103	131
Prok-RING_1	Prokaryotic RING finger family 1	0.02	5	29.10	120	136
zf-RING_UBOX	RING-type zinc-finger	0.94	0	25.20	135	151