c2pfam

AT3G28300.1 :

Domain Description Evalue Bits GA Start End
Syntaxin_2 Syntaxin-like protein 0.49 1 30.50 24 51
PIN_8 PIN like domain 0.18 2 26.10 27 103
DUF677 Protein of unknown function (DUF677) 0 475 22.90 28 380
DUF4795 Domain of unknown function (DUF4795) 0.19 2 34.80 28 130
Sec34 Sec34-like family 0.0042 7 25.00 60 119
THP2 Tho complex subunit THP2 0.0076 7 28.00 88 126
Lipoprotein_20 YfhG lipoprotein 0.52 1 27.00 92 123
BPS1 Protein BYPASS1-related 0.00084 9 21.50 92 158
DUF883 Bacterial protein of unknown function (DUF883) 1 0 40.00 93 109
CENP-H Centromere protein H (CENP-H) 0.063 4 23.00 97 160
DUF1664 Protein of unknown function (DUF1664) 0.99 0 30.00 112 124
HisKA His Kinase A (phosphoacceptor) domain 0.46 1 22.40 112 133
PIN_8 PIN like domain 0.042 4 26.10 134 213
DUF4795 Domain of unknown function (DUF4795) 0.082 3 34.80 143 211
DUF2207 Predicted membrane protein (DUF2207) 2.3E-06 17 23.00 144 260
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.18 2 38.00 150 209
CorA CorA-like Mg2+ transporter protein 0.0011 9 26.00 168 220
DUF1664 Protein of unknown function (DUF1664) 0.036 5 30.00 178 212
Lipoprotein_20 YfhG lipoprotein 0.00017 12 27.00 178 214
DUF1947 Domain of unknown function (DUF1947) 0.00098 10 22.50 180 224
Sec34 Sec34-like family 0.42 1 25.00 180 203
DUF1640 Protein of unknown function (DUF1640) 5.2E-05 14 24.20 181 235
Syntaxin_2 Syntaxin-like protein 0.74 1 30.50 183 209
CENP-H Centromere protein H (CENP-H) 0.0099 7 23.00 186 222
Phage_holin_3_6 Putative Actinobacterial Holin-X, holin superfamily III 7.3E-06 17 28.40 192 272
THP2 Tho complex subunit THP2 0.019 5 28.00 194 223
Vip3A_N Vegetative insecticide protein 3A N terminal 3.3E-05 14 25.00 263 326
PIN_8 PIN like domain 0.0013 9 26.10 265 354
HisKA His Kinase A (phosphoacceptor) domain 0.032 5 22.40 266 294
DUF4795 Domain of unknown function (DUF4795) 0.0073 6 34.80 268 372
CENP-H Centromere protein H (CENP-H) 0.55 1 23.00 268 323
DUF1664 Protein of unknown function (DUF1664) 0.015 6 30.00 276 320
Sec34 Sec34-like family 0.6 0 25.00 283 326
DUF1640 Protein of unknown function (DUF1640) 0.15 2 24.20 287 369
CorA CorA-like Mg2+ transporter protein 0.25 1 26.00 293 361
Syntaxin_2 Syntaxin-like protein 0.049 5 30.50 296 327
DUF1664 Protein of unknown function (DUF1664) 0.00062 10 30.00 301 372
LPP Repeated sequence found in lipoprotein LPP 0.0017 9 21.00 303 330
HisKA His Kinase A (phosphoacceptor) domain 0.15 3 22.40 303 333
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.0035 8 38.00 304 354
Syntaxin_2 Syntaxin-like protein 0.00027 12 30.50 307 380
DUF883 Bacterial protein of unknown function (DUF883) 0.0016 9 40.00 309 331
LPP Repeated sequence found in lipoprotein LPP 0.028 5 21.00 341 367

385

Syntaxin_2
PIN_8
DUF677
DUF4795
Sec34
THP2
Lipoprotein_20
BPS1
DUF883
CENP-H
DUF1664
HisKA
PIN_8
DUF4795
DUF2207
Baculo_PEP_C
CorA
DUF1664
Lipoprotein_20
DUF1947
Sec34
DUF1640
Syntaxin_2
CENP-H
Phage_holin_3_6
THP2
Vip3A_N
PIN_8
HisKA
DUF4795
CENP-H
DUF1664
Sec34
DUF1640
CorA
Syntaxin_2
DUF1664
LPP
HisKA
Baculo_PEP_C
Syntaxin_2
DUF883
LPP

References:

DUF4795

HisKA
9989504 Structure of CheA, a signal-transducing histidine kinase. Cell 1999;96:131-141.

DUF677
10196471 Isolation and characterization of a cDNA clone from Arabidopsis thaliana with partial sequence similarity to integrins. Gene 1999;230:33-40.

LPP

DUF1947

Phage_holin_3_6

CENP-H
10488063 Characterization of a novel kinetochore protein, CENP-H. J Biol Chem 1999;274:27343-27346.
11500386 CENP-H, a constitutive centromere component, is required for centromere targeting of CENP-C in vertebrate cells. EMBO J 2001;20:4603-4617.

PIN_8

Baculo_PEP_C
8176372 Orgyia pseudotsugata baculovirus p10 and polyhedron envelope protein genes: analysis of their relative expression levels and role in polyhedron structure. J Gen Virol 1994;75:1115-1123.

Lipoprotein_20

Syntaxin_2

Sec34
11703943 The Sec34/35 Golgi transport complex is related to the exocyst, defining a family of complexes involved in multiple steps of membrane traffic. Dev Cell 2001;1:527-537.

DUF883

DUF2207

DUF1664

BPS1

DUF1640

Vip3A_N
8643585 Vip3A, a novel Bacillus thuringiensis vegetative insecticidal protein with a wide spectrum of activities against lepidopteran insects. Proc Natl Acad Sci U S A. 1996;93:5389-5394.

THP2
11060033 A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae. EMBO J. 2000;19:5824-5834.
12093753 The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability. EMBO J. 2002;21:3526-3535.

CorA
9775386 The CorA magnesium transporter gene family. Microb Comp Genomics 1998;3:151-169.
9786860 The CorA Mg2+ transport protein of Salmonella typhimurium. Mutagenesis of conserved residues in the third membrane domain identifies a Mg2+ pore. J Biol Chem 1998;273:28663-28669.
1551905 The nuclear gene MRS2 is essential for the excision of group II introns from yeast mitochondrial transcripts in vivo. J Biol Chem 1992;267:6963-6969.

Domain	Description	Evalue	Bits	GA	Start	End
Syntaxin_2	Syntaxin-like protein	0.49	1	30.50	24	51
PIN_8	PIN like domain	0.18	2	26.10	27	103
DUF677	Protein of unknown function (DUF677)	0	475	22.90	28	380
DUF4795	Domain of unknown function (DUF4795)	0.19	2	34.80	28	130
Sec34	Sec34-like family	0.0042	7	25.00	60	119
THP2	Tho complex subunit THP2	0.0076	7	28.00	88	126
Lipoprotein_20	YfhG lipoprotein	0.52	1	27.00	92	123
BPS1	Protein BYPASS1-related	0.00084	9	21.50	92	158
DUF883	Bacterial protein of unknown function (DUF883)	1	0	40.00	93	109
CENP-H	Centromere protein H (CENP-H)	0.063	4	23.00	97	160
DUF1664	Protein of unknown function (DUF1664)	0.99	0	30.00	112	124
HisKA	His Kinase A (phosphoacceptor) domain	0.46	1	22.40	112	133
PIN_8	PIN like domain	0.042	4	26.10	134	213
DUF4795	Domain of unknown function (DUF4795)	0.082	3	34.80	143	211
DUF2207	Predicted membrane protein (DUF2207)	2.3E-06	17	23.00	144	260
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.18	2	38.00	150	209
CorA	CorA-like Mg2+ transporter protein	0.0011	9	26.00	168	220
DUF1664	Protein of unknown function (DUF1664)	0.036	5	30.00	178	212
Lipoprotein_20	YfhG lipoprotein	0.00017	12	27.00	178	214
DUF1947	Domain of unknown function (DUF1947)	0.00098	10	22.50	180	224
Sec34	Sec34-like family	0.42	1	25.00	180	203
DUF1640	Protein of unknown function (DUF1640)	5.2E-05	14	24.20	181	235
Syntaxin_2	Syntaxin-like protein	0.74	1	30.50	183	209
CENP-H	Centromere protein H (CENP-H)	0.0099	7	23.00	186	222
Phage_holin_3_6	Putative Actinobacterial Holin-X, holin superfamily III	7.3E-06	17	28.40	192	272
THP2	Tho complex subunit THP2	0.019	5	28.00	194	223
Vip3A_N	Vegetative insecticide protein 3A N terminal	3.3E-05	14	25.00	263	326
PIN_8	PIN like domain	0.0013	9	26.10	265	354
HisKA	His Kinase A (phosphoacceptor) domain	0.032	5	22.40	266	294
DUF4795	Domain of unknown function (DUF4795)	0.0073	6	34.80	268	372
CENP-H	Centromere protein H (CENP-H)	0.55	1	23.00	268	323
DUF1664	Protein of unknown function (DUF1664)	0.015	6	30.00	276	320
Sec34	Sec34-like family	0.6	0	25.00	283	326
DUF1640	Protein of unknown function (DUF1640)	0.15	2	24.20	287	369
CorA	CorA-like Mg2+ transporter protein	0.25	1	26.00	293	361
Syntaxin_2	Syntaxin-like protein	0.049	5	30.50	296	327
DUF1664	Protein of unknown function (DUF1664)	0.00062	10	30.00	301	372
LPP	Repeated sequence found in lipoprotein LPP	0.0017	9	21.00	303	330
HisKA	His Kinase A (phosphoacceptor) domain	0.15	3	22.40	303	333
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.0035	8	38.00	304	354
Syntaxin_2	Syntaxin-like protein	0.00027	12	30.50	307	380
DUF883	Bacterial protein of unknown function (DUF883)	0.0016	9	40.00	309	331
LPP	Repeated sequence found in lipoprotein LPP	0.028	5	21.00	341	367