c2pfam

AT3G28600.1 :

Domain Description Evalue Bits GA Start End
AAA_assoc Domain associated at C-terminal with AAA 1.8E-18 57 26.40 46 129
DUF815 Protein of unknown function (DUF815) 6.1E-07 19 20.10 183 298
Rad17 Rad17 cell cycle checkpoint protein 2.6E-05 15 19.70 199 267
Mg_chelatase Magnesium chelatase, subunit ChlI 0.00036 11 20.30 237 262
AAA_19 AAA domain 0.00039 11 25.10 239 263
AAA_29 P-loop containing region of AAA domain 1.4E-05 15 27.00 239 260
AAA_7 P-loop containing dynein motor region 1.3E-05 15 25.80 239 286
AAA_16 AAA ATPase domain 7.9E-07 20 32.60 239 276
AAA_11 AAA domain 1.1E-07 22 27.00 241 308
AAA_30 AAA domain 1.7E-05 15 27.00 241 273
AAA_22 AAA domain 1.7E-05 16 27.00 241 276
ABC_tran ABC transporter 0.00038 12 23.10 241 264
AAA_23 AAA domain 0.00022 12 27.00 241 449
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.00017 12 20.90 242 282
AAA_33 AAA domain 1.6E-05 16 27.00 242 267
AAA_5 AAA domain (dynein-related subfamily) 2.6E-06 18 20.80 242 303
RNA_helicase RNA helicase 2.3E-06 19 21.50 242 311
RuvB_N Holliday junction DNA helicase ruvB N-terminus 4.6E-08 24 20.00 242 299
AAA ATPase family associated with various cellular activities (AAA) 2.7E-21 67 20.80 242 381
AAA_18 AAA domain 7E-05 14 29.40 243 273
AAA_28 AAA domain 6.1E-05 14 27.00 243 267
AAA_17 AAA domain 0.00024 12 27.00 245 267
AAA_18 AAA domain 0.93 1 29.40 384 434

477

AAA_assoc
DUF815
Rad17
Mg_chelatase
AAA_19
AAA_29
AAA_7
AAA_16
AAA_11
AAA_30
AAA_22
ABC_tran
AAA_23
Viral_helicase1
AAA_33
AAA_5
RNA_helicase
RuvB_N
AAA
AAA_18
AAA_28
AAA_17
AAA_18

References:

DUF815

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_11

AAA_17

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_assoc

AAA_7

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

Viral_helicase1
8269709 Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 1993;28:375-430.
10217401 RNA helicase activity of Semliki Forest virus replicase protein NSP2. FEBS Lett 1999;448:19-22.
8057461 ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2. J Virol 1994;68:5804-5810.
10982322 Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping. J Virol 2000;74:8803-8811.

AAA_33

AAA_30

AAA_29

AAA_28

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_23

AAA_22

AAA_19

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
AAA_assoc	Domain associated at C-terminal with AAA	1.8E-18	57	26.40	46	129
DUF815	Protein of unknown function (DUF815)	6.1E-07	19	20.10	183	298
Rad17	Rad17 cell cycle checkpoint protein	2.6E-05	15	19.70	199	267
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.00036	11	20.30	237	262
AAA_19	AAA domain	0.00039	11	25.10	239	263
AAA_29	P-loop containing region of AAA domain	1.4E-05	15	27.00	239	260
AAA_7	P-loop containing dynein motor region	1.3E-05	15	25.80	239	286
AAA_16	AAA ATPase domain	7.9E-07	20	32.60	239	276
AAA_11	AAA domain	1.1E-07	22	27.00	241	308
AAA_30	AAA domain	1.7E-05	15	27.00	241	273
AAA_22	AAA domain	1.7E-05	16	27.00	241	276
ABC_tran	ABC transporter	0.00038	12	23.10	241	264
AAA_23	AAA domain	0.00022	12	27.00	241	449
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.00017	12	20.90	242	282
AAA_33	AAA domain	1.6E-05	16	27.00	242	267
AAA_5	AAA domain (dynein-related subfamily)	2.6E-06	18	20.80	242	303
RNA_helicase	RNA helicase	2.3E-06	19	21.50	242	311
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	4.6E-08	24	20.00	242	299
AAA	ATPase family associated with various cellular activities (AAA)	2.7E-21	67	20.80	242	381
AAA_18	AAA domain	7E-05	14	29.40	243	273
AAA_28	AAA domain	6.1E-05	14	27.00	243	267
AAA_17	AAA domain	0.00024	12	27.00	245	267
AAA_18	AAA domain	0.93	1	29.40	384	434