c2pfam

AT3G28640.1 :

Domain Description Evalue Bits GA Start End
ATP13 Mitochondrial ATPase expression 0.17 1 26.70 47 92
PPR_3 Pentatricopeptide repeat domain 0.68 -1 25.00 51 74
PPR_2 PPR repeat family 0.00018 11 30.00 76 126
PPR_1 PPR repeat 0.19 1 23.80 76 85
PPR_long Pentacotripeptide-repeat region of PRORP 0.062 2 27.00 77 95
PPR_3 Pentatricopeptide repeat domain 0.0038 7 25.00 80 126
PPR PPR repeat 0.00019 11 25.00 80 107
PPR PPR repeat 0.045 4 25.00 158 178
PPR_2 PPR repeat family 0.2 1 30.00 158 177
PPR_1 PPR repeat 0.9 -1 23.80 170 177
PPR_1 PPR repeat 4.2E-05 13 23.80 180 209
PPR_3 Pentatricopeptide repeat domain 0.0064 6 25.00 180 216
PPR_2 PPR repeat family 2.6E-13 39 30.00 181 229
PPR PPR repeat 5.8E-09 25 25.00 186 214
TPR_14 Tetratricopeptide repeat 0.23 2 23.50 186 225
PPR_long Pentacotripeptide-repeat region of PRORP 0.0038 6 27.00 201 243
PPR_3 Pentatricopeptide repeat domain 0.00031 10 25.00 205 247
PPR_1 PPR repeat 0.31 0 23.80 212 223
PPR_3 Pentatricopeptide repeat domain 0.08 2 25.00 250 280
PPR_2 PPR repeat family 8.1E-05 12 30.00 253 285
PPR_1 PPR repeat 0.0022 7 23.80 258 279
PPR PPR repeat 6.7E-07 19 25.00 258 285
ATP13 Mitochondrial ATPase expression 0.18 1 26.70 258 282
PPR_2 PPR repeat family 1.2E-05 15 30.00 283 322
PPR_1 PPR repeat 0.095 2 23.80 284 306
PPR_3 Pentatricopeptide repeat domain 0.0017 8 25.00 284 320
PPR PPR repeat 9.4E-05 12 25.00 286 314
TPR_14 Tetratricopeptide repeat 0.0016 9 23.50 288 329
PPR_long Pentacotripeptide-repeat region of PRORP 5.9E-05 12 27.00 304 384
ATP13 Mitochondrial ATPase expression 0.02 4 26.70 306 357
PPR PPR repeat 0.0038 7 25.00 328 349
PPR_3 Pentatricopeptide repeat domain 0.16 1 25.00 344 383
ATP13 Mitochondrial ATPase expression 0.067 2 26.70 353 383
PPR_1 PPR repeat 5.5E-10 28 23.80 357 383
PPR PPR repeat 7.7E-07 19 25.00 359 385
PPR_2 PPR repeat family 9.1E-05 12 30.00 360 385
TPR_14 Tetratricopeptide repeat 0.09 3 23.50 362 382
PPR PPR repeat 0.44 0 25.00 391 406
DYW_deaminase DYW family of nucleic acid deaminases 5.3E-05 12 31.60 463 497

504

ATP13
PPR_3
PPR_2
PPR_1
PPR_long
PPR_3
PPR
PPR
PPR_2
PPR_1
PPR_1
PPR_3
PPR_2
PPR
TPR_14
PPR_long
PPR_3
PPR_1
PPR_3
PPR_2
PPR_1
PPR
ATP13
PPR_2
PPR_1
PPR_3
PPR
TPR_14
PPR_long
ATP13
PPR
PPR_3
ATP13
PPR_1
PPR
PPR_2
TPR_14
PPR
DYW_deaminase

References:

DYW_deaminase

ATP13

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
ATP13	Mitochondrial ATPase expression	0.17	1	26.70	47	92
PPR_3	Pentatricopeptide repeat domain	0.68	-1	25.00	51	74
PPR_2	PPR repeat family	0.00018	11	30.00	76	126
PPR_1	PPR repeat	0.19	1	23.80	76	85
PPR_long	Pentacotripeptide-repeat region of PRORP	0.062	2	27.00	77	95
PPR_3	Pentatricopeptide repeat domain	0.0038	7	25.00	80	126
PPR	PPR repeat	0.00019	11	25.00	80	107
PPR	PPR repeat	0.045	4	25.00	158	178
PPR_2	PPR repeat family	0.2	1	30.00	158	177
PPR_1	PPR repeat	0.9	-1	23.80	170	177
PPR_1	PPR repeat	4.2E-05	13	23.80	180	209
PPR_3	Pentatricopeptide repeat domain	0.0064	6	25.00	180	216
PPR_2	PPR repeat family	2.6E-13	39	30.00	181	229
PPR	PPR repeat	5.8E-09	25	25.00	186	214
TPR_14	Tetratricopeptide repeat	0.23	2	23.50	186	225
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0038	6	27.00	201	243
PPR_3	Pentatricopeptide repeat domain	0.00031	10	25.00	205	247
PPR_1	PPR repeat	0.31	0	23.80	212	223
PPR_3	Pentatricopeptide repeat domain	0.08	2	25.00	250	280
PPR_2	PPR repeat family	8.1E-05	12	30.00	253	285
PPR_1	PPR repeat	0.0022	7	23.80	258	279
PPR	PPR repeat	6.7E-07	19	25.00	258	285
ATP13	Mitochondrial ATPase expression	0.18	1	26.70	258	282
PPR_2	PPR repeat family	1.2E-05	15	30.00	283	322
PPR_1	PPR repeat	0.095	2	23.80	284	306
PPR_3	Pentatricopeptide repeat domain	0.0017	8	25.00	284	320
PPR	PPR repeat	9.4E-05	12	25.00	286	314
TPR_14	Tetratricopeptide repeat	0.0016	9	23.50	288	329
PPR_long	Pentacotripeptide-repeat region of PRORP	5.9E-05	12	27.00	304	384
ATP13	Mitochondrial ATPase expression	0.02	4	26.70	306	357
PPR	PPR repeat	0.0038	7	25.00	328	349
PPR_3	Pentatricopeptide repeat domain	0.16	1	25.00	344	383
ATP13	Mitochondrial ATPase expression	0.067	2	26.70	353	383
PPR_1	PPR repeat	5.5E-10	28	23.80	357	383
PPR	PPR repeat	7.7E-07	19	25.00	359	385
PPR_2	PPR repeat family	9.1E-05	12	30.00	360	385
TPR_14	Tetratricopeptide repeat	0.09	3	23.50	362	382
PPR	PPR repeat	0.44	0	25.00	391	406
DYW_deaminase	DYW family of nucleic acid deaminases	5.3E-05	12	31.60	463	497