c2pfam

AT3G28660.1 :

Domain Description Evalue Bits GA Start End
ATP13 Mitochondrial ATPase expression 0.17 1 26.70 47 92
PPR_3 Pentatricopeptide repeat domain 0.68 -1 25.00 51 74
PPR_2 PPR repeat family 0.00016 11 30.00 76 126
PPR_1 PPR repeat 0.19 1 23.80 76 85
PPR_long Pentacotripeptide-repeat region of PRORP 0.075 1 27.00 77 95
PPR_3 Pentatricopeptide repeat domain 0.0028 7 25.00 80 126
PPR PPR repeat 0.00019 11 25.00 80 107
PPR PPR repeat 0.041 4 25.00 158 178
PPR_2 PPR repeat family 0.67 -1 30.00 158 177
PPR_1 PPR repeat 0.62 -1 23.80 168 177
PPR_1 PPR repeat 8.5E-05 12 23.80 180 209
PPR_3 Pentatricopeptide repeat domain 0.0023 7 25.00 180 216
PPR_2 PPR repeat family 7.6E-14 41 30.00 181 229
PPR PPR repeat 2.3E-09 26 25.00 186 214
TPR_14 Tetratricopeptide repeat 0.97 0 23.50 186 226
PPR_long Pentacotripeptide-repeat region of PRORP 0.0011 7 27.00 201 285
PPR_3 Pentatricopeptide repeat domain 0.00014 11 25.00 205 248
PPR_1 PPR repeat 0.46 -1 23.80 212 223
PPR_3 Pentatricopeptide repeat domain 0.056 3 25.00 250 280
PPR_2 PPR repeat family 6E-05 12 30.00 253 285
PPR_1 PPR repeat 0.001 8 23.80 258 279
PPR PPR repeat 8.5E-07 18 25.00 258 285
ATP13 Mitochondrial ATPase expression 0.19 1 26.70 258 282
TPR_14 Tetratricopeptide repeat 0.8 0 23.50 270 291
PPR_2 PPR repeat family 5.3E-05 13 30.00 283 322
PPR_1 PPR repeat 0.15 1 23.80 284 305
PPR_3 Pentatricopeptide repeat domain 0.0056 6 25.00 284 320
PPR PPR repeat 0.00059 9 25.00 286 314
TPR_14 Tetratricopeptide repeat 0.021 5 23.50 288 329
ATP13 Mitochondrial ATPase expression 0.014 4 26.70 306 357
PPR_long Pentacotripeptide-repeat region of PRORP 9.8E-05 11 27.00 315 384
PPR PPR repeat 0.013 5 25.00 328 349
PPR_long Pentacotripeptide-repeat region of PRORP 0.00022 10 27.00 337 385
PPR_3 Pentatricopeptide repeat domain 0.059 3 25.00 344 383
PPR_1 PPR repeat 1.6E-10 30 23.80 352 383
ATP13 Mitochondrial ATPase expression 0.15 1 26.70 354 383
PPR PPR repeat 3E-07 20 25.00 359 385
PPR_2 PPR repeat family 4.9E-05 13 30.00 360 385
TPR_14 Tetratricopeptide repeat 0.067 4 23.50 362 382
PPR PPR repeat 0.47 0 25.00 391 406
DYW_deaminase DYW family of nucleic acid deaminases 5.5E-05 12 31.60 463 496

504

ATP13
PPR_3
PPR_2
PPR_1
PPR_long
PPR_3
PPR
PPR
PPR_2
PPR_1
PPR_1
PPR_3
PPR_2
PPR
TPR_14
PPR_long
PPR_3
PPR_1
PPR_3
PPR_2
PPR_1
PPR
ATP13
TPR_14
PPR_2
PPR_1
PPR_3
PPR
TPR_14
ATP13
PPR_long
PPR
PPR_long
PPR_3
PPR_1
ATP13
PPR
PPR_2
TPR_14
PPR
DYW_deaminase

References:

DYW_deaminase

ATP13

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
ATP13	Mitochondrial ATPase expression	0.17	1	26.70	47	92
PPR_3	Pentatricopeptide repeat domain	0.68	-1	25.00	51	74
PPR_2	PPR repeat family	0.00016	11	30.00	76	126
PPR_1	PPR repeat	0.19	1	23.80	76	85
PPR_long	Pentacotripeptide-repeat region of PRORP	0.075	1	27.00	77	95
PPR_3	Pentatricopeptide repeat domain	0.0028	7	25.00	80	126
PPR	PPR repeat	0.00019	11	25.00	80	107
PPR	PPR repeat	0.041	4	25.00	158	178
PPR_2	PPR repeat family	0.67	-1	30.00	158	177
PPR_1	PPR repeat	0.62	-1	23.80	168	177
PPR_1	PPR repeat	8.5E-05	12	23.80	180	209
PPR_3	Pentatricopeptide repeat domain	0.0023	7	25.00	180	216
PPR_2	PPR repeat family	7.6E-14	41	30.00	181	229
PPR	PPR repeat	2.3E-09	26	25.00	186	214
TPR_14	Tetratricopeptide repeat	0.97	0	23.50	186	226
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0011	7	27.00	201	285
PPR_3	Pentatricopeptide repeat domain	0.00014	11	25.00	205	248
PPR_1	PPR repeat	0.46	-1	23.80	212	223
PPR_3	Pentatricopeptide repeat domain	0.056	3	25.00	250	280
PPR_2	PPR repeat family	6E-05	12	30.00	253	285
PPR_1	PPR repeat	0.001	8	23.80	258	279
PPR	PPR repeat	8.5E-07	18	25.00	258	285
ATP13	Mitochondrial ATPase expression	0.19	1	26.70	258	282
TPR_14	Tetratricopeptide repeat	0.8	0	23.50	270	291
PPR_2	PPR repeat family	5.3E-05	13	30.00	283	322
PPR_1	PPR repeat	0.15	1	23.80	284	305
PPR_3	Pentatricopeptide repeat domain	0.0056	6	25.00	284	320
PPR	PPR repeat	0.00059	9	25.00	286	314
TPR_14	Tetratricopeptide repeat	0.021	5	23.50	288	329
ATP13	Mitochondrial ATPase expression	0.014	4	26.70	306	357
PPR_long	Pentacotripeptide-repeat region of PRORP	9.8E-05	11	27.00	315	384
PPR	PPR repeat	0.013	5	25.00	328	349
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00022	10	27.00	337	385
PPR_3	Pentatricopeptide repeat domain	0.059	3	25.00	344	383
PPR_1	PPR repeat	1.6E-10	30	23.80	352	383
ATP13	Mitochondrial ATPase expression	0.15	1	26.70	354	383
PPR	PPR repeat	3E-07	20	25.00	359	385
PPR_2	PPR repeat family	4.9E-05	13	30.00	360	385
TPR_14	Tetratricopeptide repeat	0.067	4	23.50	362	382
PPR	PPR repeat	0.47	0	25.00	391	406
DYW_deaminase	DYW family of nucleic acid deaminases	5.5E-05	12	31.60	463	496