c2pfam

AT3G28730.1 :

Domain Description Evalue Bits GA Start End
POB3_N POB3-like N-terminal PH domain 7.8E-26 80 23.00 6 97
PH_TFIIH TFIIH p62 subunit, N-terminal domain 0.00049 10 27.10 18 59
SSrecog Structure-specific recognition protein (SSRP1) 7.2E-29 89 21.20 106 174
POB3_N POB3-like N-terminal PH domain 0.011 6 23.00 335 432
Rtt106 Histone chaperone Rttp106-like 3.9E-23 71 26.20 350 439
DNA_pol_phi DNA polymerase phi 0.00055 8 19.50 403 527
CDC45 CDC45-like protein 5.6E-05 11 26.70 426 577
YL1 YL1 nuclear protein 0.00011 12 25.60 478 576
Protamine_like Protamine and protamine like 2E-05 14 21.30 506 614
HMG_box_2 HMG-box domain 7.9E-21 64 22.40 559 629
HMG_box HMG (high mobility group) box 2.3E-26 82 24.80 562 630

646

POB3_N
PH_TFIIH
SSrecog
POB3_N
Rtt106
DNA_pol_phi
CDC45
YL1
Protamine_like
HMG_box_2
HMG_box

References:

SSrecog
12861016 The high-mobility-group box protein SSRP1/T160 is essential for cell viability in day 3.5 mouse embryos. Mol Cell Biol. 2003;23:5301-5307.

PH_TFIIH

Protamine_like

HMG_box

Rtt106
16157874 Rtt106p is a histone chaperone involved in heterochromatin-mediated silencing. Proc Natl Acad Sci U S A. 2005;102:13410-13415.

DNA_pol_phi
12093911 The fifth essential DNA polymerase phi in Saccharomyces cerevisiae is localized to the nucleolus and plays an important role in synthesis of rRNA. Proc Natl Acad Sci U S A 2002;99:9133-9138.

HMG_box_2

POB3_N

CDC45
9660782 The human homolog of Saccharomyces cerevisiae CDC45. J Biol Chem 1998;273:18205-18209.

YL1
7702631 Molecular cloning of a novel human cDNA on chromosome 1q21 and its mouse homolog encoding a nuclear protein with DNA-binding ability. Biochem Biophys Res Commun 1995;208:999-1007.

Domain	Description	Evalue	Bits	GA	Start	End
POB3_N	POB3-like N-terminal PH domain	7.8E-26	80	23.00	6	97
PH_TFIIH	TFIIH p62 subunit, N-terminal domain	0.00049	10	27.10	18	59
SSrecog	Structure-specific recognition protein (SSRP1)	7.2E-29	89	21.20	106	174
POB3_N	POB3-like N-terminal PH domain	0.011	6	23.00	335	432
Rtt106	Histone chaperone Rttp106-like	3.9E-23	71	26.20	350	439
DNA_pol_phi	DNA polymerase phi	0.00055	8	19.50	403	527
CDC45	CDC45-like protein	5.6E-05	11	26.70	426	577
YL1	YL1 nuclear protein	0.00011	12	25.60	478	576
Protamine_like	Protamine and protamine like	2E-05	14	21.30	506	614
HMG_box_2	HMG-box domain	7.9E-21	64	22.40	559	629
HMG_box	HMG (high mobility group) box	2.3E-26	82	24.80	562	630