c2pfam

AT3G28860.1 :

Domain Description Evalue Bits GA Start End
ABC_membrane ABC transporter transmembrane region 0 193 22.00 42 315
AAA_23 AAA domain 0.00044 12 27.00 380 412
ABC_tran ABC transporter 1.7E-35 114 23.10 384 532
AAA_15 AAA ATPase domain 0.008 7 32.10 387 420
AAA_7 P-loop containing dynein motor region 0.021 5 25.80 387 413
AAA_25 AAA domain 0.046 4 27.00 389 410
SMC_N RecF/RecN/SMC N terminal domain 0.036 4 40.00 390 412
FtsK_SpoIIIE FtsK/SpoIIIE family 0.0053 7 21.20 391 410
AAA_29 P-loop containing region of AAA domain 9.5E-05 13 27.00 392 410
AAA_16 AAA ATPase domain 5.8E-05 14 32.60 393 548
RsgA_GTPase RsgA GTPase 0.0039 8 30.00 393 414
AAA_30 AAA domain 0.00028 12 27.00 393 545
APS_kinase Adenylylsulphate kinase 0.0056 8 20.70 393 433
AAA_24 AAA domain 0.0087 7 27.00 393 415
P-loop_TraG TraG P-loop domain 0.012 5 25.80 394 427
DUF815 Protein of unknown function (DUF815) 0.0046 7 20.10 395 453
ABC_ATPase Predicted ATPase of the ABC class 1 -1 19.30 395 415
Zeta_toxin Zeta toxin 0.00037 11 20.10 395 434
AAA_22 AAA domain 2.5E-05 16 27.00 396 547
G-alpha G-protein alpha subunit 0.0046 7 20.10 396 420
DUF87 Domain of unknown function DUF87 3.9E-05 15 20.90 396 427
PRK Phosphoribulokinase / Uridine kinase family 0.0071 7 20.60 396 416
AAA_28 AAA domain 0.014 7 27.00 396 414
AAA_33 AAA domain 0.029 6 27.00 396 411
AAA_5 AAA domain (dynein-related subfamily) 0.065 4 20.80 397 417
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.028 5 27.00 397 418
SMC_N RecF/RecN/SMC N terminal domain 4.2E-06 17 40.00 422 576
ABC_ATPase Predicted ATPase of the ABC class 7E-05 13 19.30 476 534
SbcCD_C Putative exonuclease SbcCD, C subunit 0.012 7 27.00 519 543
ABC_membrane ABC transporter transmembrane region 0 174 22.00 688 959
Glyco_transf_22 Alg9-like mannosyltransferase family 9.8E-05 13 20.40 728 850
DUF4044 Protein of unknown function (DUF4044) 0.001 10 20.70 944 956
AAA_23 AAA domain 0.045 5 27.00 1028 1058
ABC_tran ABC transporter 7.2E-34 108 23.10 1029 1177
AAA_29 P-loop containing region of AAA domain 0.0001 13 27.00 1031 1056
AAA_7 P-loop containing dynein motor region 0.039 4 25.80 1033 1057
AAA_25 AAA domain 0.067 4 27.00 1035 1054
AAA_16 AAA ATPase domain 2.2E-05 16 32.60 1037 1196
RsgA_GTPase RsgA GTPase 0.0033 8 30.00 1038 1058
P-loop_TraG TraG P-loop domain 0.029 4 25.80 1039 1072
AAA_30 AAA domain 0.0046 8 27.00 1040 1071
DUF87 Domain of unknown function DUF87 0.049 5 20.90 1041 1070
DUF815 Protein of unknown function (DUF815) 0.0062 7 20.10 1041 1084
AAA_15 AAA ATPase domain 0.0011 10 32.10 1041 1077
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0054 7 27.00 1042 1064
AAA_22 AAA domain 0.00094 10 27.00 1042 1194
AAA_24 AAA domain 0.074 4 27.00 1042 1060
FtsK_SpoIIIE FtsK/SpoIIIE family 0.11 3 21.20 1042 1055
AAA_28 AAA domain 0.28 2 27.00 1042 1059
AAA_5 AAA domain (dynein-related subfamily) 0.12 3 20.80 1043 1062
AAA_33 AAA domain 0.1 4 27.00 1043 1055
PRK Phosphoribulokinase / Uridine kinase family 0.019 6 20.60 1043 1063
APS_kinase Adenylylsulphate kinase 0.021 6 20.70 1043 1079
Zeta_toxin Zeta toxin 0.00054 10 20.10 1043 1079
G-alpha G-protein alpha subunit 0.0094 6 20.10 1043 1064
SMC_N RecF/RecN/SMC N terminal domain 1.4E-05 16 40.00 1067 1214
ABC_ATPase Predicted ATPase of the ABC class 0.0013 9 19.30 1125 1178
SbcCD_C Putative exonuclease SbcCD, C subunit 0.017 6 27.00 1165 1187

1252

ABC_membrane
AAA_23
ABC_tran
AAA_15
AAA_7
AAA_25
SMC_N
FtsK_SpoIIIE
AAA_29
AAA_16
RsgA_GTPase
AAA_30
APS_kinase
AAA_24
P-loop_TraG
DUF815
ABC_ATPase
Zeta_toxin
AAA_22
G-alpha
DUF87
PRK
AAA_28
AAA_33
AAA_5
AAA_21
SMC_N
ABC_ATPase
SbcCD_C
ABC_membrane
Glyco_transf_22
DUF4044
AAA_23
ABC_tran
AAA_29
AAA_7
AAA_25
AAA_16
RsgA_GTPase
P-loop_TraG
AAA_30
DUF87
DUF815
AAA_15
AAA_21
AAA_22
AAA_24
FtsK_SpoIIIE
AAA_28
AAA_5
AAA_33
PRK
APS_kinase
Zeta_toxin
G-alpha
SMC_N
ABC_ATPase
SbcCD_C

References:

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

SbcCD_C

P-loop_TraG

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

DUF4044

PRK
9548738 The crystal structure of phosphoribulokinase from Rhodobacter sphaeroides reveals a fold similar to that of adenylate kinase. Biochemistry 1998;37:5074-5085.
17143579 Functional characterization of a gene encoding a dual domain for uridine kinase and uracil phosphoribosyltransferase in Arabidopsis thaliana. Plant Mol Biol. 2007;63:465-477.

Glyco_transf_22
12030331 A mannosyltransferase gene at 11q23 is disrupted by a translocation breakpoint that co-segregates with bipolar affective disorder in a small family. Neurogenetics 2002;4:43-53.
12200473 Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate. Mol Biol Evol 2002;19:1451-1463.
10954751 Critical roles of glycosylphosphatidylinositol for Trypanosoma brucei. Proc Natl Acad Sci U S A 2000;97:10336-10341.
9576863 Saccharomyces cerevisiae GPI10, the functional homologue of human PIG-B, is required for glycosylphosphatidylinositol-anchor synthesis. Biochem J 1998;332:153-159.

G-alpha
8073283 Structures of active conformations of Gi alpha 1 and the mechanism of GTP hydrolysis. Science 1994;265:1405-1412.
8851656 How G proteins work: a continuing story. Trends Biochem Sci 1996;21:41-44.

ABC_membrane

DUF815

AAA_7

AAA_33

AAA_30

AAA_29

AAA_28

AAA_25

AAA_24

AAA_23

AAA_22

AAA_21

AAA_16

AAA_15

APS_kinase
9786849 Adenosine 5'-phosphosulfate kinase from Penicillium chrysogenum. site- directed mutagenesis at putative phosphoryl-accepting and ATP P-loop residues. J Biol Chem 1998;273:28583-28589.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

FtsK_SpoIIIE
7592387 A new Escherichia coli cell division gene, ftsK. J Bacteriol 1995;177:6211-6222.
8160014 Bacillus subtilis spoIIIE protein required for DNA segregation during asymmetric cell division. Science 1994;264:572-575.

ABC_ATPase

RsgA_GTPase

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

DUF87

Domain	Description	Evalue	Bits	GA	Start	End
ABC_membrane	ABC transporter transmembrane region	0	193	22.00	42	315
AAA_23	AAA domain	0.00044	12	27.00	380	412
ABC_tran	ABC transporter	1.7E-35	114	23.10	384	532
AAA_15	AAA ATPase domain	0.008	7	32.10	387	420
AAA_7	P-loop containing dynein motor region	0.021	5	25.80	387	413
AAA_25	AAA domain	0.046	4	27.00	389	410
SMC_N	RecF/RecN/SMC N terminal domain	0.036	4	40.00	390	412
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.0053	7	21.20	391	410
AAA_29	P-loop containing region of AAA domain	9.5E-05	13	27.00	392	410
AAA_16	AAA ATPase domain	5.8E-05	14	32.60	393	548
RsgA_GTPase	RsgA GTPase	0.0039	8	30.00	393	414
AAA_30	AAA domain	0.00028	12	27.00	393	545
APS_kinase	Adenylylsulphate kinase	0.0056	8	20.70	393	433
AAA_24	AAA domain	0.0087	7	27.00	393	415
P-loop_TraG	TraG P-loop domain	0.012	5	25.80	394	427
DUF815	Protein of unknown function (DUF815)	0.0046	7	20.10	395	453
ABC_ATPase	Predicted ATPase of the ABC class	1	-1	19.30	395	415
Zeta_toxin	Zeta toxin	0.00037	11	20.10	395	434
AAA_22	AAA domain	2.5E-05	16	27.00	396	547
G-alpha	G-protein alpha subunit	0.0046	7	20.10	396	420
DUF87	Domain of unknown function DUF87	3.9E-05	15	20.90	396	427
PRK	Phosphoribulokinase / Uridine kinase family	0.0071	7	20.60	396	416
AAA_28	AAA domain	0.014	7	27.00	396	414
AAA_33	AAA domain	0.029	6	27.00	396	411
AAA_5	AAA domain (dynein-related subfamily)	0.065	4	20.80	397	417
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.028	5	27.00	397	418
SMC_N	RecF/RecN/SMC N terminal domain	4.2E-06	17	40.00	422	576
ABC_ATPase	Predicted ATPase of the ABC class	7E-05	13	19.30	476	534
SbcCD_C	Putative exonuclease SbcCD, C subunit	0.012	7	27.00	519	543
ABC_membrane	ABC transporter transmembrane region	0	174	22.00	688	959
Glyco_transf_22	Alg9-like mannosyltransferase family	9.8E-05	13	20.40	728	850
DUF4044	Protein of unknown function (DUF4044)	0.001	10	20.70	944	956
AAA_23	AAA domain	0.045	5	27.00	1028	1058
ABC_tran	ABC transporter	7.2E-34	108	23.10	1029	1177
AAA_29	P-loop containing region of AAA domain	0.0001	13	27.00	1031	1056
AAA_7	P-loop containing dynein motor region	0.039	4	25.80	1033	1057
AAA_25	AAA domain	0.067	4	27.00	1035	1054
AAA_16	AAA ATPase domain	2.2E-05	16	32.60	1037	1196
RsgA_GTPase	RsgA GTPase	0.0033	8	30.00	1038	1058
P-loop_TraG	TraG P-loop domain	0.029	4	25.80	1039	1072
AAA_30	AAA domain	0.0046	8	27.00	1040	1071
DUF87	Domain of unknown function DUF87	0.049	5	20.90	1041	1070
DUF815	Protein of unknown function (DUF815)	0.0062	7	20.10	1041	1084
AAA_15	AAA ATPase domain	0.0011	10	32.10	1041	1077
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0054	7	27.00	1042	1064
AAA_22	AAA domain	0.00094	10	27.00	1042	1194
AAA_24	AAA domain	0.074	4	27.00	1042	1060
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.11	3	21.20	1042	1055
AAA_28	AAA domain	0.28	2	27.00	1042	1059
AAA_5	AAA domain (dynein-related subfamily)	0.12	3	20.80	1043	1062
AAA_33	AAA domain	0.1	4	27.00	1043	1055
PRK	Phosphoribulokinase / Uridine kinase family	0.019	6	20.60	1043	1063
APS_kinase	Adenylylsulphate kinase	0.021	6	20.70	1043	1079
Zeta_toxin	Zeta toxin	0.00054	10	20.10	1043	1079
G-alpha	G-protein alpha subunit	0.0094	6	20.10	1043	1064
SMC_N	RecF/RecN/SMC N terminal domain	1.4E-05	16	40.00	1067	1214
ABC_ATPase	Predicted ATPase of the ABC class	0.0013	9	19.30	1125	1178
SbcCD_C	Putative exonuclease SbcCD, C subunit	0.017	6	27.00	1165	1187