c2pfam

AT3G29160.1 :

Domain Description Evalue Bits GA Start End
Pkinase Protein kinase domain 0 267 20.40 20 272
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 0 144 23.10 21 268
Shikimate_DH Shikimate / quinate 5-dehydrogenase 0.00019 11 24.30 26 88
UBA_3 Fungal ubiquitin-associated domain 0.69 0 20.40 48 64
HD_assoc Phosphohydrolase-associated domain 0.00033 11 22.20 60 118
RIO1 RIO1 family 1.8E-07 21 20.40 61 163
Kinase-like Kinase-like 3.7E-10 29 25.00 120 221
UBA UBA/TS-N domain 1.5E-12 37 21.10 294 330
UBA_3 Fungal ubiquitin-associated domain 3.8E-07 20 20.40 294 317
UBA_2 Ubiquitin associated domain (UBA) 4E-05 14 20.40 294 333
RapH_N response regulator aspartate phosphatase H, N terminal 0.0088 6 27.00 310 337
AdenylateSensor Adenylate sensor of SNF1-like protein kinase 1.3E-07 22 27.10 392 489
KA1 Kinase associated domain 1 5.7E-16 48 20.80 468 511

512

Pkinase
PK_Tyr_Ser-Thr
Shikimate_DH
UBA_3
HD_assoc
RIO1
Kinase-like
UBA
UBA_3
UBA_2
RapH_N
AdenylateSensor
KA1

References:

AdenylateSensor

HD_assoc

Shikimate_DH
7556173 The molecular biology of multidomain proteins. Selected examples. Eur J Biochem 1995;232:7-18.

KA1

RIO1
12021457 Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases. Protein Sci 2002;11:1580-1584.
12612080 Late cytoplasmic maturation of the small ribosomal subunit requires RIO proteins in Saccharomyces cerevisiae. Mol Cell Biol 2003;23:2083-2095.
12690111 Rio2p: An evolutionarily conserved, low-abundant protein kinase essential for processing of 20S Pre-rRNA in Saccharomyces cerevisiae. 0;0:0-0.
16008568 Structure and activity of the atypical serine kinase Rio1. FEBS J 2005;272:3698-3713.

Kinase-like

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

PK_Tyr_Ser-Thr

UBA_3
15328341 Solution structure of the flexible class II ubiquitin-conjugating enzyme Ubc1 provides insights for polyubiquitin chain assembly. J Biol Chem. 2004;279:47139-47147.

UBA_2
12672455 UBA domain containing proteins in fission yeast. Int J Biochem Cell Biol. 2003;35:629-636.

RapH_N

UBA
9846873 Structure of a human DNA repair protein UBA domain that interacts with HIV-1 Vpr. Nat Struct Biol 1998;5:1042-1047.
10413400 Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. Genome Res 1999;9:608-628.
8596629 The structure of the Escherichia coli EF-Tu.EF-Ts complex at 2.5 A resolution. Nature 1996;379:511-518.

Domain	Description	Evalue	Bits	GA	Start	End
Pkinase	Protein kinase domain	0	267	20.40	20	272
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	0	144	23.10	21	268
Shikimate_DH	Shikimate / quinate 5-dehydrogenase	0.00019	11	24.30	26	88
UBA_3	Fungal ubiquitin-associated domain	0.69	0	20.40	48	64
HD_assoc	Phosphohydrolase-associated domain	0.00033	11	22.20	60	118
RIO1	RIO1 family	1.8E-07	21	20.40	61	163
Kinase-like	Kinase-like	3.7E-10	29	25.00	120	221
UBA	UBA/TS-N domain	1.5E-12	37	21.10	294	330
UBA_3	Fungal ubiquitin-associated domain	3.8E-07	20	20.40	294	317
UBA_2	Ubiquitin associated domain (UBA)	4E-05	14	20.40	294	333
RapH_N	response regulator aspartate phosphatase H, N terminal	0.0088	6	27.00	310	337
AdenylateSensor	Adenylate sensor of SNF1-like protein kinase	1.3E-07	22	27.10	392	489
KA1	Kinase associated domain 1	5.7E-16	48	20.80	468	511