c2pfam

AT3G30460.1 :

Domain Description Evalue Bits GA Start End
zf-HC5HC2H PHD-like zinc-binding domain 0.00017 12 29.10 87 125
zf-RING_4 RING/Ubox like zinc-binding domain 0.42 1 27.00 89 103
zf-Di19 Drought induced 19 protein (Di19), zinc-binding 0.0057 8 27.50 90 107
PHD PHD-finger 0.00047 11 27.90 96 138
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 7.5E-06 16 27.30 96 135
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 2.3E-09 28 27.00 96 142
zf-P11 P-11 zinc finger 0.91 0 24.90 96 104
zf-RING_4 RING/Ubox like zinc-binding domain 0.0045 7 27.00 97 140
zf-RING_5 zinc-RING finger domain 1.9E-09 28 27.90 97 139
Prok-RING_4 Prokaryotic RING finger family 4 2.6E-07 21 27.00 97 141
RINGv RING-variant domain 1E-06 19 21.60 97 137
zf-RING_2 Ring finger domain 3.6E-16 50 27.30 97 138
zf-rbx1 RING-H2 zinc finger domain 1.7E-11 35 31.00 97 138
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 6.2E-12 36 27.00 97 137
zf-RING_11 RING-like zinc finger 1.4E-11 35 27.00 97 124
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 5E-11 33 21.00 97 137
zf-RING_UBOX RING-type zinc-finger 1.5E-09 28 25.20 97 135
zf-RING-like RING-like domain 9.4E-05 13 21.60 97 137
FANCL_C FANCL C-terminal domain 0.0044 8 20.70 97 132
zf-C3H2C3 Zinc-finger 0.00012 13 27.00 110 137
zf-Nse Zinc-finger of the MIZ type in Nse subunit 6E-05 14 20.70 113 137
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 2.3E-06 18 21.40 115 142
zf-P11 P-11 zinc finger 0.0043 7 24.90 116 139
zf-Di19 Drought induced 19 protein (Di19), zinc-binding 0.09 4 27.50 132 141

147

zf-HC5HC2H
zf-RING_4
zf-Di19
PHD
Zn_ribbon_17
zf-C3HC4_3
zf-P11
zf-RING_4
zf-RING_5
Prok-RING_4
RINGv
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-RING_UBOX
zf-RING-like
FANCL_C
zf-C3H2C3
zf-Nse
zf-ANAPC11
zf-P11
zf-Di19

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

Zn_ribbon_17

zf-HC5HC2H

zf-RING_11

zf-RING_UBOX

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-Di19

zf-ANAPC11

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

zf-C3HC4_2

zf-RING_5

zf-RING_4

zf-RING_2

zf-rbx1

zf-RING-like

RINGv

zf-C3HC4_3

Prok-RING_4

zf-P11

zf-C3H2C3

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
zf-HC5HC2H	PHD-like zinc-binding domain	0.00017	12	29.10	87	125
zf-RING_4	RING/Ubox like zinc-binding domain	0.42	1	27.00	89	103
zf-Di19	Drought induced 19 protein (Di19), zinc-binding	0.0057	8	27.50	90	107
PHD	PHD-finger	0.00047	11	27.90	96	138
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	7.5E-06	16	27.30	96	135
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	2.3E-09	28	27.00	96	142
zf-P11	P-11 zinc finger	0.91	0	24.90	96	104
zf-RING_4	RING/Ubox like zinc-binding domain	0.0045	7	27.00	97	140
zf-RING_5	zinc-RING finger domain	1.9E-09	28	27.90	97	139
Prok-RING_4	Prokaryotic RING finger family 4	2.6E-07	21	27.00	97	141
RINGv	RING-variant domain	1E-06	19	21.60	97	137
zf-RING_2	Ring finger domain	3.6E-16	50	27.30	97	138
zf-rbx1	RING-H2 zinc finger domain	1.7E-11	35	31.00	97	138
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	6.2E-12	36	27.00	97	137
zf-RING_11	RING-like zinc finger	1.4E-11	35	27.00	97	124
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	5E-11	33	21.00	97	137
zf-RING_UBOX	RING-type zinc-finger	1.5E-09	28	25.20	97	135
zf-RING-like	RING-like domain	9.4E-05	13	21.60	97	137
FANCL_C	FANCL C-terminal domain	0.0044	8	20.70	97	132
zf-C3H2C3	Zinc-finger	0.00012	13	27.00	110	137
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	6E-05	14	20.70	113	137
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	2.3E-06	18	21.40	115	142
zf-P11	P-11 zinc finger	0.0043	7	24.90	116	139
zf-Di19	Drought induced 19 protein (Di19), zinc-binding	0.09	4	27.50	132	141