c2pfam

AT1G15520.1 :

Domain Description Evalue Bits GA Start End
ABC_trans_N ABC-transporter N-terminal 6.4E-12 37 25.40 94 145
DnaB_C DnaB-like helicase C terminal domain 0.00075 10 20.60 166 217
ABC_tran ABC transporter 3.9E-17 54 23.10 170 352
AAA_25 AAA domain 0.00013 13 27.00 173 202
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.11 4 26.60 175 205
RsgA_GTPase RsgA GTPase 0.018 6 30.00 176 213
Rad17 Rad17 cell cycle checkpoint protein 0.049 5 19.70 179 210
AAA_16 AAA ATPase domain 0.00021 13 32.60 179 207
AAA_30 AAA domain 0.021 6 27.00 179 207
AAA_19 AAA domain 0.0029 9 25.10 179 246
AAA_29 P-loop containing region of AAA domain 0.0013 10 27.00 180 200
AAA_22 AAA domain 0.00086 11 27.00 180 219
AAA_14 AAA domain 0.026 6 27.00 181 205
Ploopntkinase3 P-loop Nucleotide Kinase3 0.009 7 27.00 181 210
Zeta_toxin Zeta toxin 0.016 6 20.10 182 246
AAA_24 AAA domain 0.027 5 27.00 182 200
AAA_23 AAA domain 0.097 4 27.00 182 212
NACHT NACHT domain 0.044 5 20.40 182 207
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.0017 9 20.00 183 212
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.019 6 27.00 183 201
AAA ATPase family associated with various cellular activities (AAA) 0.00028 13 20.80 184 210
AAA_18 AAA domain 0.012 7 29.40 184 206
AAA_33 AAA domain 0.01 7 27.00 184 205
MMR_HSR1 GTPase of unknown function 0.0055 8 24.50 184 213
Roc Ras of Complex, Roc, domain of DAPkinase 0.032 6 27.00 184 216
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.075 4 20.50 184 203
cobW CobW/HypB/UreG, nucleotide-binding domain 0.034 5 20.70 184 203
NTPase_1 NTPase 0.014 7 23.90 185 216
RNA_helicase RNA helicase 0.019 7 21.50 185 244
AAA_28 AAA domain 0.00051 12 27.00 185 202
MobB Molybdopterin guanine dinucleotide synthesis protein B 0.041 5 21.60 186 222
AAA_17 AAA domain 0.042 6 27.00 186 212
SMC_N RecF/RecN/SMC N terminal domain 0.27 2 40.00 327 370
ABC2_membrane_7 ABC-2 type transporter 2.2E-08 25 22.70 385 437
ABC2_membrane ABC-2 type transporter 0 145 25.50 506 718
PDR_assoc Plant PDR ABC transporter associated 8.5E-31 97 22.70 723 786
ABC_tran ABC transporter 5.9E-22 70 23.10 853 1005
AAA_25 AAA domain 0.0031 8 27.00 857 884
DnaB_C DnaB-like helicase C terminal domain 0.23 2 20.60 857 956
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.025 6 26.60 860 884
AAA_30 AAA domain 0.0043 8 27.00 864 884
AAA_16 AAA ATPase domain 0.0041 9 32.60 864 885
RsgA_GTPase RsgA GTPase 0.00025 12 30.00 864 886
AAA_29 P-loop containing region of AAA domain 0.00016 13 27.00 865 883
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0035 8 27.00 865 932
AAA_23 AAA domain 0.0046 9 27.00 865 883
NACHT NACHT domain 0.023 6 20.40 866 884
Zeta_toxin Zeta toxin 0.11 3 20.10 866 887
AAA_22 AAA domain 0.01 7 27.00 866 887
AAA_33 AAA domain 0.0015 10 27.00 866 896
cobW CobW/HypB/UreG, nucleotide-binding domain 0.023 6 20.70 866 884
Rad17 Rad17 cell cycle checkpoint protein 0.00069 11 19.70 867 955
AAA_28 AAA domain 0.03 6 27.00 867 887
MMR_HSR1 GTPase of unknown function 0.025 6 24.50 867 887
AAA_14 AAA domain 0.19 3 27.00 867 888
Ploopntkinase3 P-loop Nucleotide Kinase3 0.23 2 27.00 867 884
AAA_24 AAA domain 0.058 4 27.00 867 881
MobB Molybdopterin guanine dinucleotide synthesis protein B 0.053 5 21.60 867 883
NTPase_1 NTPase 1 1 23.90 868 883
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.026 6 20.50 868 886
Roc Ras of Complex, Roc, domain of DAPkinase 0.18 3 27.00 868 888
RNA_helicase RNA helicase 0.14 4 21.50 868 888
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.47 1 20.00 868 885
AAA ATPase family associated with various cellular activities (AAA) 0.042 6 20.80 868 971
AAA_18 AAA domain 0.0021 10 29.40 868 950
AAA_17 AAA domain 0.18 4 27.00 869 884
SMC_N RecF/RecN/SMC N terminal domain 0.0053 7 40.00 943 1040
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 8.3E-05 14 27.00 993 1038
NTPase_1 NTPase 0.4 2 23.90 1014 1040
ABC2_membrane_7 ABC-2 type transporter 1.6E-07 22 22.70 1034 1095
ABC2_membrane ABC-2 type transporter 0 193 25.50 1150 1364
ABC2_membrane_7 ABC-2 type transporter 0.0021 8 22.70 1191 1273

1423

ABC_trans_N
DnaB_C
ABC_tran
AAA_25
TsaE
RsgA_GTPase
Rad17
AAA_16
AAA_30
AAA_19
AAA_29
AAA_22
AAA_14
Ploopntkinase3
Zeta_toxin
AAA_24
AAA_23
NACHT
RuvB_N
AAA_21
AAA
AAA_18
AAA_33
MMR_HSR1
Roc
PduV-EutP
cobW
NTPase_1
RNA_helicase
AAA_28
MobB
AAA_17
SMC_N
ABC2_membrane_7
ABC2_membrane
PDR_assoc
ABC_tran
AAA_25
DnaB_C
TsaE
AAA_30
AAA_16
RsgA_GTPase
AAA_29
AAA_21
AAA_23
NACHT
Zeta_toxin
AAA_22
AAA_33
cobW
Rad17
AAA_28
MMR_HSR1
AAA_14
Ploopntkinase3
AAA_24
MobB
NTPase_1
PduV-EutP
Roc
RNA_helicase
RuvB_N
AAA
AAA_18
AAA_17
SMC_N
AAA_21
NTPase_1
ABC2_membrane_7
ABC2_membrane
ABC2_membrane_7

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

RsgA_GTPase

ABC2_membrane
1303751 A new subfamily of bacterial ABC-type transport systems catalyzing export of drugs and carbohydrates. Protein Sci 1992;1:1326-1332.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

ABC_trans_N

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

ABC2_membrane_7

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

TsaE

PDR_assoc
12430018 The plant PDR family of ABC transporters. Planta 2002;216:95-106.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

NTPase_1

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Roc

AAA_16

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

Ploopntkinase3

AAA_30

AAA_29

AAA_28

AAA_25

AAA_24

AAA_23

AAA_22

AAA_21

AAA_19

AAA_18

AAA_17

DnaB_C

AAA_14

MobB

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

Domain	Description	Evalue	Bits	GA	Start	End
ABC_trans_N	ABC-transporter N-terminal	6.4E-12	37	25.40	94	145
DnaB_C	DnaB-like helicase C terminal domain	0.00075	10	20.60	166	217
ABC_tran	ABC transporter	3.9E-17	54	23.10	170	352
AAA_25	AAA domain	0.00013	13	27.00	173	202
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.11	4	26.60	175	205
RsgA_GTPase	RsgA GTPase	0.018	6	30.00	176	213
Rad17	Rad17 cell cycle checkpoint protein	0.049	5	19.70	179	210
AAA_16	AAA ATPase domain	0.00021	13	32.60	179	207
AAA_30	AAA domain	0.021	6	27.00	179	207
AAA_19	AAA domain	0.0029	9	25.10	179	246
AAA_29	P-loop containing region of AAA domain	0.0013	10	27.00	180	200
AAA_22	AAA domain	0.00086	11	27.00	180	219
AAA_14	AAA domain	0.026	6	27.00	181	205
Ploopntkinase3	P-loop Nucleotide Kinase3	0.009	7	27.00	181	210
Zeta_toxin	Zeta toxin	0.016	6	20.10	182	246
AAA_24	AAA domain	0.027	5	27.00	182	200
AAA_23	AAA domain	0.097	4	27.00	182	212
NACHT	NACHT domain	0.044	5	20.40	182	207
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.0017	9	20.00	183	212
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.019	6	27.00	183	201
AAA	ATPase family associated with various cellular activities (AAA)	0.00028	13	20.80	184	210
AAA_18	AAA domain	0.012	7	29.40	184	206
AAA_33	AAA domain	0.01	7	27.00	184	205
MMR_HSR1	GTPase of unknown function	0.0055	8	24.50	184	213
Roc	Ras of Complex, Roc, domain of DAPkinase	0.032	6	27.00	184	216
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.075	4	20.50	184	203
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.034	5	20.70	184	203
NTPase_1	NTPase	0.014	7	23.90	185	216
RNA_helicase	RNA helicase	0.019	7	21.50	185	244
AAA_28	AAA domain	0.00051	12	27.00	185	202
MobB	Molybdopterin guanine dinucleotide synthesis protein B	0.041	5	21.60	186	222
AAA_17	AAA domain	0.042	6	27.00	186	212
SMC_N	RecF/RecN/SMC N terminal domain	0.27	2	40.00	327	370
ABC2_membrane_7	ABC-2 type transporter	2.2E-08	25	22.70	385	437
ABC2_membrane	ABC-2 type transporter	0	145	25.50	506	718
PDR_assoc	Plant PDR ABC transporter associated	8.5E-31	97	22.70	723	786
ABC_tran	ABC transporter	5.9E-22	70	23.10	853	1005
AAA_25	AAA domain	0.0031	8	27.00	857	884
DnaB_C	DnaB-like helicase C terminal domain	0.23	2	20.60	857	956
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.025	6	26.60	860	884
AAA_30	AAA domain	0.0043	8	27.00	864	884
AAA_16	AAA ATPase domain	0.0041	9	32.60	864	885
RsgA_GTPase	RsgA GTPase	0.00025	12	30.00	864	886
AAA_29	P-loop containing region of AAA domain	0.00016	13	27.00	865	883
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0035	8	27.00	865	932
AAA_23	AAA domain	0.0046	9	27.00	865	883
NACHT	NACHT domain	0.023	6	20.40	866	884
Zeta_toxin	Zeta toxin	0.11	3	20.10	866	887
AAA_22	AAA domain	0.01	7	27.00	866	887
AAA_33	AAA domain	0.0015	10	27.00	866	896
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.023	6	20.70	866	884
Rad17	Rad17 cell cycle checkpoint protein	0.00069	11	19.70	867	955
AAA_28	AAA domain	0.03	6	27.00	867	887
MMR_HSR1	GTPase of unknown function	0.025	6	24.50	867	887
AAA_14	AAA domain	0.19	3	27.00	867	888
Ploopntkinase3	P-loop Nucleotide Kinase3	0.23	2	27.00	867	884
AAA_24	AAA domain	0.058	4	27.00	867	881
MobB	Molybdopterin guanine dinucleotide synthesis protein B	0.053	5	21.60	867	883
NTPase_1	NTPase	1	1	23.90	868	883
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.026	6	20.50	868	886
Roc	Ras of Complex, Roc, domain of DAPkinase	0.18	3	27.00	868	888
RNA_helicase	RNA helicase	0.14	4	21.50	868	888
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.47	1	20.00	868	885
AAA	ATPase family associated with various cellular activities (AAA)	0.042	6	20.80	868	971
AAA_18	AAA domain	0.0021	10	29.40	868	950
AAA_17	AAA domain	0.18	4	27.00	869	884
SMC_N	RecF/RecN/SMC N terminal domain	0.0053	7	40.00	943	1040
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	8.3E-05	14	27.00	993	1038
NTPase_1	NTPase	0.4	2	23.90	1014	1040
ABC2_membrane_7	ABC-2 type transporter	1.6E-07	22	22.70	1034	1095
ABC2_membrane	ABC-2 type transporter	0	193	25.50	1150	1364
ABC2_membrane_7	ABC-2 type transporter	0.0021	8	22.70	1191	1273