c2pfam

AT1G15730.1 :

Domain Description Evalue Bits GA Start End
AAA_29 P-loop containing region of AAA domain 3.9E-05 13 27.00 89 112
AAA_16 AAA ATPase domain 4.7E-05 14 32.60 89 130
ATPase_2 ATPase domain predominantly from Archaea 0.00035 11 33.20 91 118
GTP_EFTU Elongation factor Tu GTP binding domain 0.0038 7 20.20 92 117
cobW CobW/HypB/UreG, nucleotide-binding domain 0 193 20.70 93 277
AAA_23 AAA domain 0.0002 12 27.00 93 113
SRPRB Signal recognition particle receptor beta subunit 3.9E-05 13 20.50 93 128
RsgA_GTPase RsgA GTPase 0.0014 9 30.00 94 117
T2SSE Type II/IV secretion system protein 3E-05 13 24.90 95 127
AAA_22 AAA domain 0.00032 11 27.00 95 117
MMR_HSR1 GTPase of unknown function 0.0015 9 24.50 96 123
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.00041 9 23.10 97 188
MobB Molybdopterin guanine dinucleotide synthesis protein B 8.1E-06 16 21.60 97 185
RsgA_GTPase RsgA GTPase 1 -1 30.00 122 154
GTP_EFTU Elongation factor Tu GTP binding domain 0.0074 6 20.20 211 282
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.31 0 23.10 245 272
RsgA_GTPase RsgA GTPase 0.019 5 30.00 247 277
Zip ZIP Zinc transporter 0.0012 8 27.70 308 350
CobW_C Cobalamin synthesis protein cobW C-terminal domain 5.5E-24 74 20.60 354 447

448

AAA_29
AAA_16
ATPase_2
GTP_EFTU
cobW
AAA_23
SRPRB
RsgA_GTPase
T2SSE
AAA_22
MMR_HSR1
MeaB
MobB
RsgA_GTPase
GTP_EFTU
MeaB
RsgA_GTPase
Zip
CobW_C

References:

AAA_16

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

CobW_C
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

SRPRB
7844142 The beta subunit of the signal recognition particle receptor is a transmembrane GTPase that anchors the alpha subunit, a peripheral membrane GTPase, to the endoplasmic reticulum membrane. J Cell Biol. 1995;128:273-282.

RsgA_GTPase

T2SSE

Zip
9618566 Identification of a family of zinc transporter genes from Arabidopsis that respond to zinc deficiency. Proc Natl Acad Sci U S A 1998;95:7220-7224.

MeaB

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

ATPase_2

AAA_29

AAA_23

AAA_22

MobB

Domain	Description	Evalue	Bits	GA	Start	End
AAA_29	P-loop containing region of AAA domain	3.9E-05	13	27.00	89	112
AAA_16	AAA ATPase domain	4.7E-05	14	32.60	89	130
ATPase_2	ATPase domain predominantly from Archaea	0.00035	11	33.20	91	118
GTP_EFTU	Elongation factor Tu GTP binding domain	0.0038	7	20.20	92	117
cobW	CobW/HypB/UreG, nucleotide-binding domain	0	193	20.70	93	277
AAA_23	AAA domain	0.0002	12	27.00	93	113
SRPRB	Signal recognition particle receptor beta subunit	3.9E-05	13	20.50	93	128
RsgA_GTPase	RsgA GTPase	0.0014	9	30.00	94	117
T2SSE	Type II/IV secretion system protein	3E-05	13	24.90	95	127
AAA_22	AAA domain	0.00032	11	27.00	95	117
MMR_HSR1	GTPase of unknown function	0.0015	9	24.50	96	123
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.00041	9	23.10	97	188
MobB	Molybdopterin guanine dinucleotide synthesis protein B	8.1E-06	16	21.60	97	185
RsgA_GTPase	RsgA GTPase	1	-1	30.00	122	154
GTP_EFTU	Elongation factor Tu GTP binding domain	0.0074	6	20.20	211	282
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.31	0	23.10	245	272
RsgA_GTPase	RsgA GTPase	0.019	5	30.00	247	277
Zip	ZIP Zinc transporter	0.0012	8	27.70	308	350
CobW_C	Cobalamin synthesis protein cobW C-terminal domain	5.5E-24	74	20.60	354	447