c2pfam

AT1G15740.1 :

Domain Description Evalue Bits GA Start End
LRR_6 Leucine Rich repeat 2.5E-05 13 23.40 137 158
LRR_8 Leucine rich repeat 0.021 4 27.00 138 170
LRR_4 Leucine Rich repeats (2 copies) 3.6E-05 13 27.00 138 176
SfsA Sugar fermentation stimulation protein 0.00045 9 25.00 144 193
LRR_6 Leucine Rich repeat 1.5E-05 14 23.40 161 184
LRR_8 Leucine rich repeat 1E-06 17 27.00 163 222
LRR_1 Leucine Rich Repeat 0.04 4 20.60 163 183
LRR_6 Leucine Rich repeat 0.00013 11 23.40 187 209
LRR_4 Leucine Rich repeats (2 copies) 2.4E-05 14 27.00 188 222
RNA_pol_A_CTD Bacterial RNA polymerase, alpha chain C terminal domain 0.0071 5 21.40 192 224
LRR_1 Leucine Rich Repeat 0.0013 8 20.60 213 228
LRR_6 Leucine Rich repeat 0.14 2 23.40 213 226
LRR_4 Leucine Rich repeats (2 copies) 0.0092 5 27.00 231 251
LRR_4 Leucine Rich repeats (2 copies) 2.2E-06 17 27.00 236 276
LRR_6 Leucine Rich repeat 4.8E-06 15 23.40 236 258
LRR_8 Leucine rich repeat 2E-08 23 27.00 237 295
LRR_1 Leucine Rich Repeat 0.014 5 20.60 237 249
LRR_8 Leucine rich repeat 6.7E-08 21 27.00 261 293
LRR_4 Leucine Rich repeats (2 copies) 0.0002 11 27.00 261 295
LRR_6 Leucine Rich repeat 0.0088 5 23.40 261 281
LRR_1 Leucine Rich Repeat 0.23 2 20.60 262 284
LRR_1 Leucine Rich Repeat 0.16 2 20.60 286 303
LRR_8 Leucine rich repeat 3.3E-11 32 27.00 311 370
LRR_6 Leucine Rich repeat 0.00013 11 23.40 312 331
LRR_1 Leucine Rich Repeat 0.084 3 20.60 312 324
LRR_4 Leucine Rich repeats (2 copies) 0.002 8 27.00 314 347
LRR_4 Leucine Rich repeats (2 copies) 2.9E-06 17 27.00 335 372
LRR_6 Leucine Rich repeat 0.003 7 23.40 335 348
LRR_1 Leucine Rich Repeat 0.037 4 20.60 335 351
LRR_6 Leucine Rich repeat 1.4E-07 20 23.40 358 379
LRR_4 Leucine Rich repeats (2 copies) 4.1E-05 13 27.00 358 392
LRR_1 Leucine Rich Repeat 0.0043 7 20.60 359 375
LRR_8 Leucine rich repeat 1.6E-07 20 27.00 383 438
LRR_4 Leucine Rich repeats (2 copies) 4.7E-05 13 27.00 384 416
LRR_6 Leucine Rich repeat 0.0015 8 23.40 384 403
LRR_6 Leucine Rich repeat 0.00013 11 23.40 406 427
LRR_4 Leucine Rich repeats (2 copies) 8.1E-06 15 27.00 407 438
LRR_1 Leucine Rich Repeat 0.65 0 20.60 407 415
LRR_6 Leucine Rich repeat 0.018 4 23.40 430 450
LRR_8 Leucine rich repeat 6.5E-08 21 27.00 431 485
LRR_4 Leucine Rich repeats (2 copies) 2.3E-06 17 27.00 454 487
LRR_6 Leucine Rich repeat 0.00057 9 23.40 454 470
LRR_1 Leucine Rich Repeat 0.41 1 20.60 456 477
SfsA Sugar fermentation stimulation protein 0.67 -2 25.00 461 481
LRR_6 Leucine Rich repeat 0.044 3 23.40 478 498
LRR_8 Leucine rich repeat 3.1E-10 29 27.00 479 537
RNA_pol_A_CTD Bacterial RNA polymerase, alpha chain C terminal domain 0.0015 7 21.40 490 521
LRR_4 Leucine Rich repeats (2 copies) 0.031 4 27.00 498 517
LRR_6 Leucine Rich repeat 0.045 3 23.40 502 518
LRR_4 Leucine Rich repeats (2 copies) 0.0017 8 27.00 503 539
LRR_1 Leucine Rich Repeat 0.038 4 20.60 503 517
LRR_8 Leucine rich repeat 4.4E-06 15 27.00 523 563
LRR_4 Leucine Rich repeats (2 copies) 0.00014 11 27.00 528 563
LRR_6 Leucine Rich repeat 0.076 2 23.40 528 547
LRR_4 Leucine Rich repeats (2 copies) 0.016 5 27.00 551 579
LRR_6 Leucine Rich repeat 0.076 2 23.40 552 569
LRR_1 Leucine Rich Repeat 0.016 5 20.60 552 567

585

LRR_6
LRR_8
LRR_4
SfsA
LRR_6
LRR_8
LRR_1
LRR_6
LRR_4
RNA_pol_A_CTD
LRR_1
LRR_6
LRR_4
LRR_4
LRR_6
LRR_8
LRR_1
LRR_8
LRR_4
LRR_6
LRR_1
LRR_1
LRR_8
LRR_6
LRR_1
LRR_4
LRR_4
LRR_6
LRR_1
LRR_6
LRR_4
LRR_1
LRR_8
LRR_4
LRR_6
LRR_6
LRR_4
LRR_1
LRR_6
LRR_8
LRR_4
LRR_6
LRR_1
SfsA
LRR_6
LRR_8
RNA_pol_A_CTD
LRR_4
LRR_6
LRR_4
LRR_1
LRR_8
LRR_4
LRR_6
LRR_4
LRR_6
LRR_1

References:

RNA_pol_A_CTD
7491496 Solution structure of the activator contact domain of the RNA polymerase alpha subunit. Science 1995;270:1495-1497.
7613089 The Escherichia coli RNA polymerase alpha subunit: structure and function. Curr Opin Genet Dev 1995;5:197-203.
9050843 The two alpha subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA upstream element. Proc Natl Acad Sci USA 1997;94:1709-1714.

SfsA
2013578 Nucleotide sequence and characterization of the sfs1 gene: sfs1 is involved in CRP*-dependent mal gene expression in Escherichia coli. J Bacteriol 1991;173:2644-2648.
11272834 Effects of the Escherichia coli sfsA gene on mal genes expression and a DNA binding activity of SfsA. Biosci Biotechnol Biochem 2001;65:213-217.

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRR_8

LRR_6

LRR_4

Domain	Description	Evalue	Bits	GA	Start	End
LRR_6	Leucine Rich repeat	2.5E-05	13	23.40	137	158
LRR_8	Leucine rich repeat	0.021	4	27.00	138	170
LRR_4	Leucine Rich repeats (2 copies)	3.6E-05	13	27.00	138	176
SfsA	Sugar fermentation stimulation protein	0.00045	9	25.00	144	193
LRR_6	Leucine Rich repeat	1.5E-05	14	23.40	161	184
LRR_8	Leucine rich repeat	1E-06	17	27.00	163	222
LRR_1	Leucine Rich Repeat	0.04	4	20.60	163	183
LRR_6	Leucine Rich repeat	0.00013	11	23.40	187	209
LRR_4	Leucine Rich repeats (2 copies)	2.4E-05	14	27.00	188	222
RNA_pol_A_CTD	Bacterial RNA polymerase, alpha chain C terminal domain	0.0071	5	21.40	192	224
LRR_1	Leucine Rich Repeat	0.0013	8	20.60	213	228
LRR_6	Leucine Rich repeat	0.14	2	23.40	213	226
LRR_4	Leucine Rich repeats (2 copies)	0.0092	5	27.00	231	251
LRR_4	Leucine Rich repeats (2 copies)	2.2E-06	17	27.00	236	276
LRR_6	Leucine Rich repeat	4.8E-06	15	23.40	236	258
LRR_8	Leucine rich repeat	2E-08	23	27.00	237	295
LRR_1	Leucine Rich Repeat	0.014	5	20.60	237	249
LRR_8	Leucine rich repeat	6.7E-08	21	27.00	261	293
LRR_4	Leucine Rich repeats (2 copies)	0.0002	11	27.00	261	295
LRR_6	Leucine Rich repeat	0.0088	5	23.40	261	281
LRR_1	Leucine Rich Repeat	0.23	2	20.60	262	284
LRR_1	Leucine Rich Repeat	0.16	2	20.60	286	303
LRR_8	Leucine rich repeat	3.3E-11	32	27.00	311	370
LRR_6	Leucine Rich repeat	0.00013	11	23.40	312	331
LRR_1	Leucine Rich Repeat	0.084	3	20.60	312	324
LRR_4	Leucine Rich repeats (2 copies)	0.002	8	27.00	314	347
LRR_4	Leucine Rich repeats (2 copies)	2.9E-06	17	27.00	335	372
LRR_6	Leucine Rich repeat	0.003	7	23.40	335	348
LRR_1	Leucine Rich Repeat	0.037	4	20.60	335	351
LRR_6	Leucine Rich repeat	1.4E-07	20	23.40	358	379
LRR_4	Leucine Rich repeats (2 copies)	4.1E-05	13	27.00	358	392
LRR_1	Leucine Rich Repeat	0.0043	7	20.60	359	375
LRR_8	Leucine rich repeat	1.6E-07	20	27.00	383	438
LRR_4	Leucine Rich repeats (2 copies)	4.7E-05	13	27.00	384	416
LRR_6	Leucine Rich repeat	0.0015	8	23.40	384	403
LRR_6	Leucine Rich repeat	0.00013	11	23.40	406	427
LRR_4	Leucine Rich repeats (2 copies)	8.1E-06	15	27.00	407	438
LRR_1	Leucine Rich Repeat	0.65	0	20.60	407	415
LRR_6	Leucine Rich repeat	0.018	4	23.40	430	450
LRR_8	Leucine rich repeat	6.5E-08	21	27.00	431	485
LRR_4	Leucine Rich repeats (2 copies)	2.3E-06	17	27.00	454	487
LRR_6	Leucine Rich repeat	0.00057	9	23.40	454	470
LRR_1	Leucine Rich Repeat	0.41	1	20.60	456	477
SfsA	Sugar fermentation stimulation protein	0.67	-2	25.00	461	481
LRR_6	Leucine Rich repeat	0.044	3	23.40	478	498
LRR_8	Leucine rich repeat	3.1E-10	29	27.00	479	537
RNA_pol_A_CTD	Bacterial RNA polymerase, alpha chain C terminal domain	0.0015	7	21.40	490	521
LRR_4	Leucine Rich repeats (2 copies)	0.031	4	27.00	498	517
LRR_6	Leucine Rich repeat	0.045	3	23.40	502	518
LRR_4	Leucine Rich repeats (2 copies)	0.0017	8	27.00	503	539
LRR_1	Leucine Rich Repeat	0.038	4	20.60	503	517
LRR_8	Leucine rich repeat	4.4E-06	15	27.00	523	563
LRR_4	Leucine Rich repeats (2 copies)	0.00014	11	27.00	528	563
LRR_6	Leucine Rich repeat	0.076	2	23.40	528	547
LRR_4	Leucine Rich repeats (2 copies)	0.016	5	27.00	551	579
LRR_6	Leucine Rich repeat	0.076	2	23.40	552	569
LRR_1	Leucine Rich Repeat	0.016	5	20.60	552	567