c2pfam

AT3G44190.1 :

Domain Description Evalue Bits GA Start End
Eno-Rase_NADH_b NAD(P)H binding domain of trans-2-enoyl-CoA reductase 0.091 3 23.40 4 28
K_oxygenase L-lysine 6-monooxygenase (NADPH-requiring) 0.12 2 21.00 8 24
Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase 0.1 2 30.00 10 62
NAD_binding_7 Putative NAD(P)-binding 2.5E-05 15 22.10 10 64
DUF1188 Protein of unknown function (DUF1188) 0.001 9 26.50 10 46
Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase 2.1E-38 123 22.80 12 282
Pyr_redox Pyridine nucleotide-disulphide oxidoreductase 0.0034 9 22.00 13 45
DAO FAD dependent oxidoreductase 0.0016 8 24.70 13 42
HI0933_like HI0933-like protein 0.0089 5 20.30 13 40
Trp_halogenase Tryptophan halogenase 0.0028 7 19.60 13 39
AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain 0.0026 7 20.30 13 28
FAD_binding_2 FAD binding domain 0.011 5 20.40 14 27
FAD_oxidored FAD dependent oxidoreductase 0.2 1 27.00 14 26
Thi4 Thi4 family 0.87 -1 20.00 14 36
FAD_binding_3 FAD binding domain 0.0043 7 20.10 14 31
Lycopene_cycl Lycopene cyclase protein 0.025 4 23.40 14 43
GIDA Glucose inhibited division protein A 0.004 7 20.00 14 27
NAD_binding_8 NAD(P)-binding Rossmann-like domain 0.0014 9 21.90 16 40
NAD_binding_9 FAD-NAD(P)-binding 0.23 2 21.80 16 50
Thi4 Thi4 family 0.07 3 20.00 74 132
DAO FAD dependent oxidoreductase 0.51 0 24.70 77 111
NAD_binding_9 FAD-NAD(P)-binding 0.005 7 21.80 79 109
GIDA Glucose inhibited division protein A 0.43 0 20.00 88 109
Methyltrn_RNA_3 Putative RNA methyltransferase 0.00018 11 20.60 89 179
Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase 2.7E-09 27 30.00 97 258
K_oxygenase L-lysine 6-monooxygenase (NADPH-requiring) 2.8E-09 27 21.00 103 174
Eno-Rase_NADH_b NAD(P)H binding domain of trans-2-enoyl-CoA reductase 0.0014 9 23.40 122 164
Thi4 Thi4 family 0.0001 12 20.00 123 166
DUF1188 Protein of unknown function (DUF1188) 0.038 4 26.50 126 178
NAD_binding_7 Putative NAD(P)-binding 0.093 4 22.10 135 168
Pyr_redox Pyridine nucleotide-disulphide oxidoreductase 1.6E-13 42 22.00 136 206
HI0933_like HI0933-like protein 0.00062 9 20.30 136 172
AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain 0.079 3 20.30 136 189
FAD_binding_2 FAD binding domain 0.017 5 20.40 137 170
Trp_halogenase Tryptophan halogenase 0.0089 5 19.60 137 165
FAD_oxidored FAD dependent oxidoreductase 0.019 5 27.00 137 170
FAD_binding_3 FAD binding domain 0.0058 6 20.10 137 152
GIDA Glucose inhibited division protein A 0.024 4 20.00 137 154
Lycopene_cycl Lycopene cyclase protein 3.6E-05 13 23.40 137 172
DAO FAD dependent oxidoreductase 0.016 5 24.70 137 168
NAD_binding_9 FAD-NAD(P)-binding 0.0058 7 21.80 139 157
NAD_binding_8 NAD(P)-binding Rossmann-like domain 0.0024 9 21.90 139 170
NAD_binding_9 FAD-NAD(P)-binding 0.0012 9 21.80 180 231
DAO FAD dependent oxidoreductase 0.079 3 24.70 180 231
FAD_oxidored FAD dependent oxidoreductase 0.29 1 27.00 183 230
GIDA Glucose inhibited division protein A 0.14 2 20.00 257 276
HI0933_like HI0933-like protein 0.96 -2 20.30 258 283

367

Eno-Rase_NADH_b
K_oxygenase
Pyr_redox_3
NAD_binding_7
DUF1188
Pyr_redox_2
Pyr_redox
DAO
HI0933_like
Trp_halogenase
AlaDh_PNT_C
FAD_binding_2
FAD_oxidored
Thi4
FAD_binding_3
Lycopene_cycl
GIDA
NAD_binding_8
NAD_binding_9
Thi4
DAO
NAD_binding_9
GIDA
Methyltrn_RNA_3
Pyr_redox_3
K_oxygenase
Eno-Rase_NADH_b
Thi4
DUF1188
NAD_binding_7
Pyr_redox
HI0933_like
AlaDh_PNT_C
FAD_binding_2
Trp_halogenase
FAD_oxidored
FAD_binding_3
GIDA
Lycopene_cycl
DAO
NAD_binding_9
NAD_binding_8
NAD_binding_9
DAO
FAD_oxidored
GIDA
HI0933_like

References:

GIDA

Eno-Rase_NADH_b
15569691 Mitochondrial trans-2-enoyl-CoA reductase of wax ester fermentation from Euglena gracilis defines a new family of enzymes involved in lipid synthesis. J Biol Chem. 2005;280:4329-4338.

NAD_binding_8

Lycopene_cycl
8837512 Functional analysis of the beta and epsilon lycopene cyclase enzymes of Arabidopsis reveals a mechanism for control of cyclic carotenoid formation. Plant Cell 1996;8:1613-1626.
11226339 One ring or two? Determination of ring number in carotenoids by lycopene epsilon-cyclases. Proc Natl Acad Sci U S A 2001;98:2905-2910.

Methyltrn_RNA_3

Trp_halogenase
10547442 Conservation of the pyrrolnitrin biosynthetic gene cluster among six pyrrolnitrin-producing strains. FEMS Microbiol Lett 1999;180:39-44.

FAD_binding_3
1409567 Crystal structure of the reduced form of p-hydroxybenzoate hydroxylase refined at 2.3A resolution. Proteins 1992;14:178-190.

FAD_binding_2
8061609 Structure of glutathione reductase from Escherichia coli at 1.86 A resolution: comparison with the enzyme from human erythrocytes. Protein Sci 1994;3:799-809.

DAO
9153426 Active site plasticity in D-amino acid oxidase: a crystallographic analysis. Biochemistry 1997;36:5853-5860.

DUF1188

HI0933_like

Pyr_redox_3

FAD_oxidored

AlaDh_PNT_C
11354603 Lysine metabolism in higher plants. Amino Acids 2001;20:261-279.

Pyr_redox_2
8805537 Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase. Structure 1996;4:277-286.

K_oxygenase

Pyr_redox
8805537 Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase. Structure 1996;4:277-286.

NAD_binding_9

Thi4
7961415 Cloning, nucleotide sequence, and regulation of Schizosaccharomyces pombe thi4, a thiamine biosynthetic gene. J Bacteriol 1994;176:6631-6635.

NAD_binding_7

Domain	Description	Evalue	Bits	GA	Start	End
Eno-Rase_NADH_b	NAD(P)H binding domain of trans-2-enoyl-CoA reductase	0.091	3	23.40	4	28
K_oxygenase	L-lysine 6-monooxygenase (NADPH-requiring)	0.12	2	21.00	8	24
Pyr_redox_3	Pyridine nucleotide-disulphide oxidoreductase	0.1	2	30.00	10	62
NAD_binding_7	Putative NAD(P)-binding	2.5E-05	15	22.10	10	64
DUF1188	Protein of unknown function (DUF1188)	0.001	9	26.50	10	46
Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	2.1E-38	123	22.80	12	282
Pyr_redox	Pyridine nucleotide-disulphide oxidoreductase	0.0034	9	22.00	13	45
DAO	FAD dependent oxidoreductase	0.0016	8	24.70	13	42
HI0933_like	HI0933-like protein	0.0089	5	20.30	13	40
Trp_halogenase	Tryptophan halogenase	0.0028	7	19.60	13	39
AlaDh_PNT_C	Alanine dehydrogenase/PNT, C-terminal domain	0.0026	7	20.30	13	28
FAD_binding_2	FAD binding domain	0.011	5	20.40	14	27
FAD_oxidored	FAD dependent oxidoreductase	0.2	1	27.00	14	26
Thi4	Thi4 family	0.87	-1	20.00	14	36
FAD_binding_3	FAD binding domain	0.0043	7	20.10	14	31
Lycopene_cycl	Lycopene cyclase protein	0.025	4	23.40	14	43
GIDA	Glucose inhibited division protein A	0.004	7	20.00	14	27
NAD_binding_8	NAD(P)-binding Rossmann-like domain	0.0014	9	21.90	16	40
NAD_binding_9	FAD-NAD(P)-binding	0.23	2	21.80	16	50
Thi4	Thi4 family	0.07	3	20.00	74	132
DAO	FAD dependent oxidoreductase	0.51	0	24.70	77	111
NAD_binding_9	FAD-NAD(P)-binding	0.005	7	21.80	79	109
GIDA	Glucose inhibited division protein A	0.43	0	20.00	88	109
Methyltrn_RNA_3	Putative RNA methyltransferase	0.00018	11	20.60	89	179
Pyr_redox_3	Pyridine nucleotide-disulphide oxidoreductase	2.7E-09	27	30.00	97	258
K_oxygenase	L-lysine 6-monooxygenase (NADPH-requiring)	2.8E-09	27	21.00	103	174
Eno-Rase_NADH_b	NAD(P)H binding domain of trans-2-enoyl-CoA reductase	0.0014	9	23.40	122	164
Thi4	Thi4 family	0.0001	12	20.00	123	166
DUF1188	Protein of unknown function (DUF1188)	0.038	4	26.50	126	178
NAD_binding_7	Putative NAD(P)-binding	0.093	4	22.10	135	168
Pyr_redox	Pyridine nucleotide-disulphide oxidoreductase	1.6E-13	42	22.00	136	206
HI0933_like	HI0933-like protein	0.00062	9	20.30	136	172
AlaDh_PNT_C	Alanine dehydrogenase/PNT, C-terminal domain	0.079	3	20.30	136	189
FAD_binding_2	FAD binding domain	0.017	5	20.40	137	170
Trp_halogenase	Tryptophan halogenase	0.0089	5	19.60	137	165
FAD_oxidored	FAD dependent oxidoreductase	0.019	5	27.00	137	170
FAD_binding_3	FAD binding domain	0.0058	6	20.10	137	152
GIDA	Glucose inhibited division protein A	0.024	4	20.00	137	154
Lycopene_cycl	Lycopene cyclase protein	3.6E-05	13	23.40	137	172
DAO	FAD dependent oxidoreductase	0.016	5	24.70	137	168
NAD_binding_9	FAD-NAD(P)-binding	0.0058	7	21.80	139	157
NAD_binding_8	NAD(P)-binding Rossmann-like domain	0.0024	9	21.90	139	170
NAD_binding_9	FAD-NAD(P)-binding	0.0012	9	21.80	180	231
DAO	FAD dependent oxidoreductase	0.079	3	24.70	180	231
FAD_oxidored	FAD dependent oxidoreductase	0.29	1	27.00	183	230
GIDA	Glucose inhibited division protein A	0.14	2	20.00	257	276
HI0933_like	HI0933-like protein	0.96	-2	20.30	258	283