c2pfam

AT1G15880.1 :

Domain Description Evalue Bits GA Start End
Spectrin Spectrin repeat 0.31 1 23.20 5 23
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.00058 10 38.00 7 93
Sec20 Sec20 0.25 1 27.00 8 39
Uso1_p115_C Uso1 / p115 like vesicle tethering protein, C terminal region 0.00041 10 22.20 8 67
DHR10 Designed helical repeat protein 10 domain 0.00011 12 28.40 9 66
FlxA FlxA-like protein 0.0013 8 26.30 9 65
DUF5344 Family of unknown function (DUF5344) 0.015 6 27.00 12 34
TALPID3 Hedgehog signalling target 0.00013 9 27.00 13 115
FCH Fes/CIP4 homology domain 0.45 1 21.10 32 61
DUF3583 Protein of unknown function (DUF3583) 1.6E-05 14 20.70 34 107
FlxA FlxA-like protein 0.0027 7 26.30 40 79
DUF5344 Family of unknown function (DUF5344) 0.023 5 27.00 44 96
Spectrin Spectrin repeat 0.0013 9 23.20 54 160
Sec20 Sec20 0.007 6 27.00 57 114
V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 0.63 0 24.80 75 93
Uso1_p115_C Uso1 / p115 like vesicle tethering protein, C terminal region 0.91 -1 22.20 79 109
DHR10 Designed helical repeat protein 10 domain 0.15 2 28.40 81 110
FCH Fes/CIP4 homology domain 0.099 3 21.10 82 101
FCH Fes/CIP4 homology domain 0.0033 7 21.10 109 131
Spectrin Spectrin repeat 0.15 2 23.20 130 159
V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 3.8E-23 71 24.80 134 198
Sec20 Sec20 5.4E-07 19 27.00 144 221
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.0056 6 38.00 167 193
DUF5344 Family of unknown function (DUF5344) 0.97 0 27.00 174 203

223

Spectrin
Baculo_PEP_C
Sec20
Uso1_p115_C
DHR10
FlxA
DUF5344
TALPID3
FCH
DUF3583
FlxA
DUF5344
Spectrin
Sec20
V-SNARE_C
Uso1_p115_C
DHR10
FCH
FCH
Spectrin
V-SNARE_C
Sec20
Baculo_PEP_C
DUF5344

References:

Sec20
8334998 The TIP1 gene of Saccharomyces cerevisiae encodes an 80 kDa cytoplasmic protein that interacts with the cytoplasmic domain of Sec20p. EMBO J 1993;12:2831-2840.

Uso1_p115_C
11927603 Sequential tethering of Golgins and catalysis of SNAREpin assembly by the vesicle-tethering protein p115. J Cell Biol 2002;157:45-62.
12077354 Vesicle tethering complexes in membrane traffic. J Cell Sci 2002;115:2627-2637.

TALPID3

DUF3583

Baculo_PEP_C
8176372 Orgyia pseudotsugata baculovirus p10 and polyhedron envelope protein genes: analysis of their relative expression levels and role in polyhedron structure. J Gen Virol 1994;75:1115-1123.

DUF5344

FCH
9210375 A Cdc42 target protein with homology to the non-kinase domain of FER has a potential role in regulating the actin cytoskeleton. Curr Biol 1997;7:479-487.

FlxA

V-SNARE_C
19064671 Binding interactions control SNARE specificity in vivo. J Cell Biol. 2008;183:1089-1100.

DHR10

Spectrin
7584474 Actin-binding proteins. 1: Spectrin super family. Protein Profile 1995;2:732-732.
8266097 Crystal structure of the repetitive segments of spectrin. Science 1993;262:2027-2030.

Domain	Description	Evalue	Bits	GA	Start	End
Spectrin	Spectrin repeat	0.31	1	23.20	5	23
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.00058	10	38.00	7	93
Sec20	Sec20	0.25	1	27.00	8	39
Uso1_p115_C	Uso1 / p115 like vesicle tethering protein, C terminal region	0.00041	10	22.20	8	67
DHR10	Designed helical repeat protein 10 domain	0.00011	12	28.40	9	66
FlxA	FlxA-like protein	0.0013	8	26.30	9	65
DUF5344	Family of unknown function (DUF5344)	0.015	6	27.00	12	34
TALPID3	Hedgehog signalling target	0.00013	9	27.00	13	115
FCH	Fes/CIP4 homology domain	0.45	1	21.10	32	61
DUF3583	Protein of unknown function (DUF3583)	1.6E-05	14	20.70	34	107
FlxA	FlxA-like protein	0.0027	7	26.30	40	79
DUF5344	Family of unknown function (DUF5344)	0.023	5	27.00	44	96
Spectrin	Spectrin repeat	0.0013	9	23.20	54	160
Sec20	Sec20	0.007	6	27.00	57	114
V-SNARE_C	Snare region anchored in the vesicle membrane C-terminus	0.63	0	24.80	75	93
Uso1_p115_C	Uso1 / p115 like vesicle tethering protein, C terminal region	0.91	-1	22.20	79	109
DHR10	Designed helical repeat protein 10 domain	0.15	2	28.40	81	110
FCH	Fes/CIP4 homology domain	0.099	3	21.10	82	101
FCH	Fes/CIP4 homology domain	0.0033	7	21.10	109	131
Spectrin	Spectrin repeat	0.15	2	23.20	130	159
V-SNARE_C	Snare region anchored in the vesicle membrane C-terminus	3.8E-23	71	24.80	134	198
Sec20	Sec20	5.4E-07	19	27.00	144	221
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.0056	6	38.00	167	193
DUF5344	Family of unknown function (DUF5344)	0.97	0	27.00	174	203